Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   BQ6063_RS10005 Genome accession   NZ_LT632615
Coordinates   2202408..2203214 (-) Length   268 a.a.
NCBI ID   WP_061638310.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST23 isolate ST23     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2197408..2208214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ6063_RS09980 (EUL28_01985) - 2197848..2198498 (-) 651 WP_061690906.1 lysoplasmalogenase -
  BQ6063_RS09985 (EUL28_01986) - 2198578..2199078 (-) 501 WP_011214243.1 hypothetical protein -
  BQ6063_RS09990 (EUL28_01987) - 2199570..2200430 (+) 861 WP_011215957.1 polysaccharide deacetylase family protein -
  BQ6063_RS09995 (EUL28_01988) - 2200548..2201744 (-) 1197 WP_011214245.1 murein transglycosylase A -
  BQ6063_RS10000 (EUL28_01989) lpp1976 2201854..2202411 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  BQ6063_RS10005 (EUL28_01990) lpp1977 2202408..2203214 (-) 807 WP_061638310.1 PilW family protein Machinery gene
  BQ6063_RS10010 (EUL28_01991) lpp1978 2203153..2203467 (-) 315 WP_061638309.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BQ6063_RS10015 (EUL28_01992) hisC 2203627..2204736 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  BQ6063_RS10020 (EUL28_01993) - 2204773..2205114 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  BQ6063_RS10025 (EUL28_01995) secF 2205292..2206209 (-) 918 WP_027220536.1 protein translocase subunit SecF -
  BQ6063_RS10030 (EUL28_01996) secD 2206222..2208078 (-) 1857 WP_027220537.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31444.66 Da        Isoelectric Point: 9.8676

>NTDB_id=1145544 BQ6063_RS10005 WP_061638310.1 2202408..2203214(-) (lpp1977) [Legionella pneumophila strain ST23 isolate ST23]
MLRGLKKASQLFAPMIWVLIEMGRQTGFSLSEMLISLFLASIITITLTQFYIRSKPQYLKAQERLEINFDLLWIGDLLRD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVTNFMSPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPLRFRYNEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
IKQRSVLDFAIGSDKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1145544 BQ6063_RS10005 WP_061638310.1 2202408..2203214(-) (lpp1977) [Legionella pneumophila strain ST23 isolate ST23]
ATATTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATAACCCTTACTCAGTTTTATATAAGAA
GCAAGCCTCAATACCTAAAGGCACAAGAACGGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATTTACTAAGAGAC
AGTATTAGAAAGGCTGGATTTACTCCATGCGTAAGTGTCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
GATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTTCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGA
CAAATTTTATGAGCCCAACACAAATAGTGATTGAAGAGTCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACAGTTTCAAAAATAGATAAACTAAGCAATGGATATCAAATTACTTTAAAAAAACCACT
GCGGTTCCGGTACAACGAAATTGCTTACTTAGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATCAAACAGAGGTCAGTATTGGATTTTGCAATTGGTAGCGATAAGGAAACGCTACGTAAAATCAGTGTTTCGGTACGAAA
TTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

98.881

100

0.989
  lpp1977 Legionella pneumophila strain ERS1305867

98.134

100

0.981

Multiple sequence alignment