Detailed information
Bioinformatically predicted
Overview
| Name | lpp1978 | Type | Machinery gene |
| Locus tag | BQ6063_RS10010 | Genome accession | NZ_LT632615 |
| Coordinates | 2203153..2203467 (-) | Length | 104 a.a. |
| NCBI ID | WP_061638309.1 | Uniprot ID | - |
| Organism | Legionella pneumophila strain ST23 isolate ST23 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2198153..2208467
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BQ6063_RS09985 (EUL28_01986) | - | 2198578..2199078 (-) | 501 | WP_011214243.1 | hypothetical protein | - |
| BQ6063_RS09990 (EUL28_01987) | - | 2199570..2200430 (+) | 861 | WP_011215957.1 | polysaccharide deacetylase family protein | - |
| BQ6063_RS09995 (EUL28_01988) | - | 2200548..2201744 (-) | 1197 | WP_011214245.1 | murein transglycosylase A | - |
| BQ6063_RS10000 (EUL28_01989) | lpp1976 | 2201854..2202411 (-) | 558 | WP_027220531.1 | hypothetical protein | Machinery gene |
| BQ6063_RS10005 (EUL28_01990) | lpp1977 | 2202408..2203214 (-) | 807 | WP_061638310.1 | PilW family protein | Machinery gene |
| BQ6063_RS10010 (EUL28_01991) | lpp1978 | 2203153..2203467 (-) | 315 | WP_061638309.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| BQ6063_RS10015 (EUL28_01992) | hisC | 2203627..2204736 (+) | 1110 | WP_027220534.1 | histidinol-phosphate transaminase | - |
| BQ6063_RS10020 (EUL28_01993) | - | 2204773..2205114 (+) | 342 | WP_010947715.1 | 4a-hydroxytetrahydrobiopterin dehydratase | - |
| BQ6063_RS10025 (EUL28_01995) | secF | 2205292..2206209 (-) | 918 | WP_027220536.1 | protein translocase subunit SecF | - |
| BQ6063_RS10030 (EUL28_01996) | secD | 2206222..2208078 (-) | 1857 | WP_027220537.1 | protein translocase subunit SecD | - |
| BQ6063_RS10035 (EUL28_01997) | yajC | 2208100..2208435 (-) | 336 | WP_010947718.1 | preprotein translocase subunit YajC | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 12263.42 Da Isoelectric Point: 10.0591
>NTDB_id=1145545 BQ6063_RS10010 WP_061638309.1 2203153..2203467(-) (lpp1978) [Legionella pneumophila strain ST23 isolate ST23]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNITWFKKSQSIIRSYDLGAN
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNITWFKKSQSIIRSYDLGAN
Nucleotide
Download Length: 315 bp
>NTDB_id=1145545 BQ6063_RS10010 WP_061638309.1 2203153..2203467(-) (lpp1978) [Legionella pneumophila strain ST23 isolate ST23]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATATTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATATTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| lpp1978 | Legionella pneumophila strain ERS1305867 |
99.038 |
100 |
0.99 |
| lpp1978 | Legionella pneumophila str. Paris |
97.115 |
100 |
0.971 |