Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   B5474_RS17275 Genome accession   NZ_LT605059
Coordinates   3610084..3610902 (-) Length   272 a.a.
NCBI ID   WP_079549042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain NCTC7364     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3605084..3615902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5474_RS17260 (NCTC7364_03459) pilE 3605301..3605726 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  B5474_RS17265 (NCTC7364_03460) pilY2 3605723..3606205 (-) 483 WP_002010622.1 type IV pilin protein Machinery gene
  B5474_RS17270 (NCTC7364_03461) pilY1 3606218..3610072 (-) 3855 WP_079549041.1 PilC/PilY family type IV pilus protein Machinery gene
  B5474_RS17275 (NCTC7364_03462) pilX 3610084..3610902 (-) 819 WP_079549042.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B5474_RS17280 (NCTC7364_03463) pilW 3610899..3611900 (-) 1002 WP_000079198.1 PilW family protein Machinery gene
  B5474_RS17285 (NCTC7364_03464) pilV 3611901..3612461 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  B5474_RS17290 (NCTC7364_03465) fimU 3612455..3612928 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B5474_RS17295 (NCTC7364_03466) ispH 3613098..3614048 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  B5474_RS17300 (NCTC7364_03467) gmk 3614171..3614800 (+) 630 WP_000015937.1 guanylate kinase -
  B5474_RS17305 (NCTC7364_03468) rpoZ 3614873..3615151 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  B5474_RS20100 - 3615190..3615320 (+) 131 Protein_3383 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=1145160 B5474_RS17275 WP_079549042.1 3610084..3610902(-) (pilX) [Acinetobacter baumannii strain NCTC7364]
MTYLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1145160 B5474_RS17275 WP_079549042.1 3610084..3610902(-) (pilX) [Acinetobacter baumannii strain NCTC7364]
ATGACCTATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACTGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment