Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   B5474_RS17280 Genome accession   NZ_LT605059
Coordinates   3610899..3611900 (-) Length   333 a.a.
NCBI ID   WP_000079198.1    Uniprot ID   A0A4Q4HDZ2
Organism   Acinetobacter baumannii strain NCTC7364     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3605899..3616900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5474_RS17270 (NCTC7364_03461) pilY1 3606218..3610072 (-) 3855 WP_079549041.1 PilC/PilY family type IV pilus protein Machinery gene
  B5474_RS17275 (NCTC7364_03462) pilX 3610084..3610902 (-) 819 WP_079549042.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B5474_RS17280 (NCTC7364_03463) pilW 3610899..3611900 (-) 1002 WP_000079198.1 PilW family protein Machinery gene
  B5474_RS17285 (NCTC7364_03464) pilV 3611901..3612461 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  B5474_RS17290 (NCTC7364_03465) fimU 3612455..3612928 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B5474_RS17295 (NCTC7364_03466) ispH 3613098..3614048 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  B5474_RS17300 (NCTC7364_03467) gmk 3614171..3614800 (+) 630 WP_000015937.1 guanylate kinase -
  B5474_RS17305 (NCTC7364_03468) rpoZ 3614873..3615151 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  B5474_RS20100 - 3615190..3615320 (+) 131 Protein_3383 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35790.50 Da        Isoelectric Point: 6.1010

>NTDB_id=1145161 B5474_RS17280 WP_000079198.1 3610899..3611900(-) (pilW) [Acinetobacter baumannii strain NCTC7364]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1145161 B5474_RS17280 WP_000079198.1 3610899..3611900(-) (pilW) [Acinetobacter baumannii strain NCTC7364]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCTAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCGCAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAATAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q4HDZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997

Multiple sequence alignment