Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   STACADC2_RS07930 Genome accession   NZ_LT604076
Coordinates   1500837..1501355 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   A0A0P6V0E7
Organism   Streptococcus thermophilus strain ACA-DC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1495837..1506355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STACADC2_RS07910 (STACADC2_1526) - 1497746..1498690 (+) 945 WP_011227550.1 magnesium transporter CorA family protein -
  STACADC2_RS07915 (STACADC2_1527) - 1498761..1499432 (+) 672 WP_011227551.1 DUF1129 domain-containing protein -
  STACADC2_RS07920 (STACADC2_1528) - 1499549..1500430 (+) 882 WP_011681623.1 DUF4300 family protein -
  STACADC2_RS07925 (STACADC2_1529) rpsR 1500556..1500795 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  STACADC2_RS07930 (STACADC2_1530) ssb 1500837..1501355 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  STACADC2_RS07935 (STACADC2_1531) rpsF 1501367..1501657 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  STACADC2_RS07940 (STACADC2_1532) - 1501876..1502829 (+) 954 WP_087010173.1 hypothetical protein -
  STACADC2_RS07945 (STACADC2_1534) mutY 1503747..1504898 (+) 1152 WP_087010174.1 A/G-specific adenine glycosylase -
  STACADC2_RS07950 (STACADC2_1535) - 1505225..1505476 (-) 252 WP_011226551.1 hypothetical protein -
  STACADC2_RS07955 (STACADC2_1536) - 1505579..1505806 (-) 228 WP_087010175.1 hypothetical protein -
  STACADC2_RS07960 (STACADC2_1537) - 1505793..1506254 (-) 462 WP_231906174.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=1145106 STACADC2_RS07930 WP_002951905.1 1500837..1501355(-) (ssb) [Streptococcus thermophilus strain ACA-DC]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1145106 STACADC2_RS07930 WP_002951905.1 1500837..1501355(-) (ssb) [Streptococcus thermophilus strain ACA-DC]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAGCTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTAGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P6V0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366

Multiple sequence alignment