Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   STACADC2_RS07265 Genome accession   NZ_LT604076
Coordinates   1364956..1365990 (-) Length   344 a.a.
NCBI ID   WP_375708305.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ACA-DC     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1359956..1370990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STACADC2_RS07240 (STACADC2_1380) ilvD 1360208..1361926 (-) 1719 WP_011226435.1 dihydroxy-acid dehydratase -
  STACADC2_RS07245 (STACADC2_1381) - 1362039..1363220 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  STACADC2_RS07255 (STACADC2_1382) trmB 1363456..1364097 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STACADC2_RS07260 (STACADC2_1383) ccrZ 1364107..1364898 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  STACADC2_RS07265 (STACADC2_1384) pptB 1364956..1365990 (-) 1035 WP_375708305.1 ABC transporter permease Regulator
  STACADC2_RS07270 (STACADC2_1385) pptA 1365990..1366721 (-) 732 WP_002947523.1 ABC transporter ATP-binding protein Regulator
  STACADC2_RS07275 (STACADC2_1386) - 1366786..1367205 (+) 420 WP_002891660.1 HIT family protein -
  STACADC2_RS07280 (STACADC2_1387) - 1367202..1367510 (+) 309 WP_087010123.1 hypothetical protein -
  STACADC2_RS10115 - 1368062..1368283 (-) 222 WP_087010124.1 hypothetical protein -
  STACADC2_RS07290 (STACADC2_1389) - 1368302..1368937 (-) 636 WP_087010125.1 DUF4230 domain-containing protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40112.62 Da        Isoelectric Point: 10.5363

>NTDB_id=1145101 STACADC2_RS07265 WP_375708305.1 1364956..1365990(-) (pptB) [Streptococcus thermophilus strain ACA-DC]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWRVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVNNLKRLINQIVLVMTLIQALCLFDLKFS
LILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1145101 STACADC2_RS07265 WP_375708305.1 1364956..1365990(-) (pptB) [Streptococcus thermophilus strain ACA-DC]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGAGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCAGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAACA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.256

100

0.983

  pptB Streptococcus salivarius strain HSISS4

92.733

100

0.927


Multiple sequence alignment