Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   STACADC2_RS07270 Genome accession   NZ_LT604076
Coordinates   1365990..1366721 (-) Length   243 a.a.
NCBI ID   WP_002947523.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ACA-DC     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360990..1371721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STACADC2_RS07245 (STACADC2_1381) - 1362039..1363220 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  STACADC2_RS07255 (STACADC2_1382) trmB 1363456..1364097 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STACADC2_RS07260 (STACADC2_1383) ccrZ 1364107..1364898 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  STACADC2_RS07265 (STACADC2_1384) pptB 1364956..1365990 (-) 1035 WP_375708305.1 ABC transporter permease Regulator
  STACADC2_RS07270 (STACADC2_1385) pptA 1365990..1366721 (-) 732 WP_002947523.1 ABC transporter ATP-binding protein Regulator
  STACADC2_RS07275 (STACADC2_1386) - 1366786..1367205 (+) 420 WP_002891660.1 HIT family protein -
  STACADC2_RS07280 (STACADC2_1387) - 1367202..1367510 (+) 309 WP_087010123.1 hypothetical protein -
  STACADC2_RS10115 - 1368062..1368283 (-) 222 WP_087010124.1 hypothetical protein -
  STACADC2_RS07290 (STACADC2_1389) - 1368302..1368937 (-) 636 WP_087010125.1 DUF4230 domain-containing protein -
  STACADC2_RS07295 (STACADC2_1391) - 1369492..1371591 (-) 2100 WP_087010126.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26760.94 Da        Isoelectric Point: 4.3974

>NTDB_id=1145102 STACADC2_RS07270 WP_002947523.1 1365990..1366721(-) (pptA) [Streptococcus thermophilus strain ACA-DC]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELSQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1145102 STACADC2_RS07270 WP_002947523.1 1365990..1366721(-) (pptA) [Streptococcus thermophilus strain ACA-DC]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTAGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

99.588

100

0.996
  pptA Streptococcus salivarius strain HSISS4

96.708

100

0.967

Multiple sequence alignment