Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BFP94_RS04795 Genome accession   NZ_LT604072
Coordinates   1161556..1162944 (-) Length   462 a.a.
NCBI ID   WP_003477091.1    Uniprot ID   A0A1C3TL96
Organism   Xanthomonas translucens pv. translucens DSM 18974 isolate peng1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156556..1167944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP94_RS19820 - 1157649..1158086 (+) 438 WP_038232341.1 pilin -
  BFP94_RS04775 (BN444_01934) - 1158332..1158709 (-) 378 WP_080603077.1 hypothetical protein -
  BFP94_RS04780 (BN444_01933) pilB 1158825..1160561 (+) 1737 WP_003477096.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BFP94_RS04785 (BN444_01932) - 1160571..1161188 (-) 618 WP_003477095.1 Fic family protein -
  BFP94_RS04790 (BN444_01931) - 1161185..1161367 (-) 183 WP_003477093.1 YhfG family protein -
  BFP94_RS04795 (BN444_01930) pilR 1161556..1162944 (-) 1389 WP_003477091.1 sigma-54 dependent transcriptional regulator Regulator
  BFP94_RS04800 (BN444_01929) - 1163019..1164632 (-) 1614 WP_003477089.1 ATP-binding protein -
  BFP94_RS04805 (BN444_01928) sucC 1164873..1166036 (+) 1164 WP_003466374.1 ADP-forming succinate--CoA ligase subunit beta -
  BFP94_RS04810 (BN444_01927) sucD 1166060..1166932 (+) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  BFP94_RS04815 (BN444_01926) - 1167104..1167445 (+) 342 WP_155759090.1 hypothetical protein -
  BFP94_RS21660 (BN444_01925) - 1167464..1167856 (+) 393 WP_065898879.1 hypothetical protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49799.21 Da        Isoelectric Point: 6.5828

>NTDB_id=1145020 BFP94_RS04795 WP_003477091.1 1161556..1162944(-) (pilR) [Xanthomonas translucens pv. translucens DSM 18974 isolate peng1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEATPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1145020 BFP94_RS04795 WP_003477091.1 1161556..1162944(-) (pilR) [Xanthomonas translucens pv. translucens DSM 18974 isolate peng1]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGTTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTTGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAGCTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAATTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAGGTGCCCACCGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCACGCCCGCA
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3TL96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472

Multiple sequence alignment