Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BGLY_RS09225 Genome accession   NZ_LT603683
Coordinates   1809872..1810774 (+) Length   300 a.a.
NCBI ID   WP_046128973.1    Uniprot ID   -
Organism   Bacillus glycinifermentans isolate BGLY     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1792099..1816134 1809872..1810774 within 0


Gene organization within MGE regions


Location: 1792099..1816134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGLY_RS09130 (BGLY_1807) fabG 1792419..1793162 (+) 744 WP_046128990.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  BGLY_RS09135 (BGLY_1808) acpP 1793229..1793462 (+) 234 WP_003181706.1 acyl carrier protein -
  BGLY_RS09140 (BGLY_1809) rnc 1793608..1794357 (+) 750 WP_046128989.1 ribonuclease III -
  BGLY_RS09145 (BGLY_1810) smc 1794456..1798016 (+) 3561 WP_046128988.1 chromosome segregation protein SMC -
  BGLY_RS09150 (BGLY_1811) ftsY 1798033..1799019 (+) 987 WP_046128987.1 signal recognition particle-docking protein FtsY -
  BGLY_RS09155 (BGLY_1812) - 1799165..1799488 (+) 324 WP_046128986.1 putative DNA-binding protein -
  BGLY_RS09160 (BGLY_1813) ffh 1799505..1800845 (+) 1341 WP_046128985.1 signal recognition particle protein -
  BGLY_RS09165 (BGLY_1814) rpsP 1800953..1801225 (+) 273 WP_006638197.1 30S ribosomal protein S16 -
  BGLY_RS09170 (BGLY_1815) - 1801225..1801470 (+) 246 WP_046128984.1 KH domain-containing protein -
  BGLY_RS09175 (BGLY_1816) - 1801608..1801994 (+) 387 WP_046128983.1 YlqD family protein -
  BGLY_RS09180 (BGLY_1817) rimM 1801999..1802520 (+) 522 WP_046128982.1 ribosome maturation factor RimM -
  BGLY_RS09185 (BGLY_1818) trmD 1802517..1803248 (+) 732 WP_046128981.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BGLY_RS09190 (BGLY_1819) rplS 1803386..1803733 (+) 348 WP_046128980.1 50S ribosomal protein L19 -
  BGLY_RS09195 (BGLY_1820) ylqF 1803848..1804699 (+) 852 WP_046128979.1 ribosome biogenesis GTPase YlqF -
  BGLY_RS09200 (BGLY_1821) - 1804773..1805540 (+) 768 WP_046128978.1 ribonuclease HII -
  BGLY_RS09205 (BGLY_1822) - 1805565..1807244 (+) 1680 WP_052948479.1 hypothetical protein -
  BGLY_RS09210 (BGLY_1823) - 1807241..1807519 (+) 279 WP_046128976.1 FlhB-like flagellar biosynthesis protein -
  BGLY_RS09215 (BGLY_1824) sucC 1807696..1808856 (+) 1161 WP_046128975.1 ADP-forming succinate--CoA ligase subunit beta -
  BGLY_RS09220 (BGLY_1825) sucD 1808876..1809778 (+) 903 WP_046128974.1 succinate--CoA ligase subunit alpha -
  BGLY_RS09225 (BGLY_1826) dprA 1809872..1810774 (+) 903 WP_046128973.1 DNA-processing protein DprA Machinery gene
  BGLY_RS09230 (BGLY_1827) topA 1810980..1813055 (+) 2076 WP_046128972.1 type I DNA topoisomerase -
  BGLY_RS09235 (BGLY_1828) trmFO 1813132..1814436 (+) 1305 WP_046128971.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BGLY_RS09240 (BGLY_1829) xerC 1814503..1815417 (+) 915 WP_046128970.1 tyrosine recombinase XerC -
  BGLY_RS09245 (BGLY_1830) hslV 1815431..1815973 (+) 543 WP_046128969.1 ATP-dependent protease subunit HslV -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33149.22 Da        Isoelectric Point: 9.8887

>NTDB_id=1144975 BGLY_RS09225 WP_046128973.1 1809872..1810774(+) (dprA) [Bacillus glycinifermentans isolate BGLY]
MNDKCGLLILLRLYSNLSPSLLFKWWKEDPSLSLAEDKNHSLKKLSSKSINVGAIRKLAEKELPNVKQIIASYRENGISV
IAISSPEYPPLLKTIHDPPPVLFLKGNKTLLYEKRLIGIVGTRNPSQYGENAASYFARALSKKEWTIVSGLAKGIDGHAH
RETIRSKGRTIGIIAGGFNCIYPRENRLLAQQMAESHLLVSEHLPDTKPQKWHFPQRNRLISGLTEGIVVIQGKEKSGSL
ITAYQALEQGREVFAVPGSIFDENSKGPAGLIQEGAKLVSSVDDILGELPAFQARYTESV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1144975 BGLY_RS09225 WP_046128973.1 1809872..1810774(+) (dprA) [Bacillus glycinifermentans isolate BGLY]
ATGAATGACAAGTGCGGGCTTTTAATATTGCTTCGCCTGTACAGCAACCTTTCCCCTTCCCTCTTGTTTAAATGGTGGAA
GGAAGACCCGTCCTTATCGCTTGCGGAAGATAAGAACCACTCTCTAAAAAAGCTGTCATCGAAAAGCATAAACGTCGGCG
CCATCCGAAAGCTGGCCGAAAAAGAGCTTCCGAATGTTAAGCAGATCATCGCAAGCTACCGCGAAAACGGAATAAGCGTA
ATTGCGATTTCGTCCCCTGAATATCCACCCCTGCTGAAAACGATCCACGACCCGCCTCCCGTTCTTTTTCTCAAAGGAAA
CAAAACCCTTCTTTATGAAAAAAGGCTCATCGGCATTGTGGGAACCCGAAATCCTTCACAGTACGGCGAAAATGCGGCTT
CCTACTTTGCCAGAGCGCTCAGCAAAAAGGAATGGACAATCGTCAGCGGGCTTGCCAAAGGGATCGACGGTCACGCCCAT
CGGGAGACAATCCGTTCAAAAGGAAGAACGATCGGCATCATCGCCGGCGGATTCAACTGCATATATCCTCGTGAAAACCG
TCTGCTTGCCCAACAGATGGCCGAAAGCCATCTTCTGGTGTCAGAGCACCTACCCGATACAAAACCCCAAAAATGGCACT
TTCCGCAGCGAAATCGGCTGATCAGCGGCTTAACAGAAGGAATCGTCGTCATTCAGGGCAAGGAAAAAAGCGGCTCGCTC
ATCACCGCCTACCAGGCGCTCGAACAAGGCAGGGAAGTATTTGCGGTGCCTGGTTCAATATTTGACGAAAATTCAAAAGG
ACCGGCCGGGCTGATCCAGGAAGGAGCAAAACTCGTCTCAAGCGTAGACGATATTCTCGGTGAGCTTCCGGCATTTCAGG
CCCGTTATACGGAATCCGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

56.376

99.333

0.56
  dprA Legionella pneumophila strain ERS1305867

40

100

0.407
  dprA Lactococcus lactis subsp. cremoris KW2

39.35

92.333

0.363

Multiple sequence alignment