Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   C7S03_RS03050 Genome accession   NZ_LT592163
Coordinates   520632..521105 (+) Length   157 a.a.
NCBI ID   WP_025455782.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_W     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515632..526105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S03_RS03025 (WHOW_00549) dnaB 516086..517492 (+) 1407 WP_003690896.1 replicative DNA helicase -
  C7S03_RS03030 (WHOW_00550) pilH 517800..518465 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7S03_RS03035 (WHOW_00551) pilI 518497..519105 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Machinery gene
  C7S03_RS03040 (WHOW_00552) pilJ 519102..520043 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  C7S03_RS03045 (WHOW_00553) pilK 520022..520630 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7S03_RS03050 (WHOW_00554) pilL 520632..521105 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  C7S03_RS03060 (WHOW_00555C) - 521717..522162 (-) 446 Protein_526 AzlC family ABC transporter permease -
  C7S03_RS03065 (WHOW_00556) dut 522328..522780 (+) 453 WP_003690909.1 dUTP diphosphatase -
  C7S03_RS03070 (WHOW_00557) dapC 522858..524045 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  C7S03_RS03075 (WHOW_00558) yaaA 524201..524980 (+) 780 WP_003690913.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17506.38 Da        Isoelectric Point: 9.8238

>NTDB_id=1144583 C7S03_RS03050 WP_025455782.1 520632..521105(+) (pilL) [Neisseria gonorrhoeae strain WHO_W]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVKFVDAEKPRVYRLVGVPNVGTGYTLSVWMNSVGDGYKCRDAASAKAYKEQLSGDGGCEALSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1144583 C7S03_RS03050 WP_025455782.1 520632..521105(+) (pilL) [Neisseria gonorrhoeae strain WHO_W]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATGCGGAAAAACCAAGGGTATACAGGTTGGTCGG
TGTTCCGAACGTGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCGGCAAAGGCCTATAAAGAGCAGTTGTCCGGAGACGGTGGTTGTGAAGCCTTATCCAACCGTAAGAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

89.172

100

0.892
  pilX Neisseria meningitidis 8013

85.987

100

0.86

Multiple sequence alignment