Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   C7S03_RS03030 Genome accession   NZ_LT592163
Coordinates   517800..518465 (+) Length   221 a.a.
NCBI ID   WP_003690897.1    Uniprot ID   A0AB74EDV3
Organism   Neisseria gonorrhoeae strain WHO_W     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512800..523465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S03_RS02995 (WHOW_00545C) cysT 512889..513725 (-) 837 WP_047949632.1 sulfate ABC transporter permease subunit CysT -
  C7S03_RS03000 (WHOW_00546) - 513911..514243 (+) 333 WP_003687908.1 hypothetical protein -
  C7S03_RS03005 (WHOW_00547) - 514602..515111 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  C7S03_RS03015 (WHOW_00548C) - 515341..515922 (-) 582 WP_003690895.1 superoxide dismutase -
  C7S03_RS03025 (WHOW_00549) dnaB 516086..517492 (+) 1407 WP_003690896.1 replicative DNA helicase -
  C7S03_RS03030 (WHOW_00550) pilH 517800..518465 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7S03_RS03035 (WHOW_00551) pilI 518497..519105 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Machinery gene
  C7S03_RS03040 (WHOW_00552) pilJ 519102..520043 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  C7S03_RS03045 (WHOW_00553) pilK 520022..520630 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7S03_RS03050 (WHOW_00554) pilL 520632..521105 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  C7S03_RS03060 (WHOW_00555C) - 521717..522162 (-) 446 Protein_526 AzlC family ABC transporter permease -
  C7S03_RS03065 (WHOW_00556) dut 522328..522780 (+) 453 WP_003690909.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.05 Da        Isoelectric Point: 9.4066

>NTDB_id=1144579 C7S03_RS03030 WP_003690897.1 517800..518465(+) (pilH) [Neisseria gonorrhoeae strain WHO_W]
MCTRKQQGFTLIELLIVIAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDLGKKEQGMLAFGDKNDNKAYDGDSADVFLRNVVLNDDIKDKRINYTFNHIAFGQTRSTADRVVWTFNQNGTFGYSS
DRNLKNNSKFVYSDGYIQIVLTDAKAVSAGEKKFRSAVVLIDSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1144579 C7S03_RS03030 WP_003690897.1 517800..518465(+) (pilH) [Neisseria gonorrhoeae strain WHO_W]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATAGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTGGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGTGA
TTCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTCAAACACGGTCGACTGCCGATCGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTCGTCC
GATCGGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGCCGGTGAAAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

82.805

100

0.828

Multiple sequence alignment