Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   C7S04_RS03120 Genome accession   NZ_LT592159
Coordinates   522269..522880 (+) Length   203 a.a.
NCBI ID   WP_012503481.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_U     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517269..527880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S04_RS03085 (WHOU_00550C) - 517592..518173 (-) 582 WP_003698180.1 superoxide dismutase -
  C7S04_RS03095 (WHOU_00551) dnaB 518336..519742 (+) 1407 WP_010359914.1 replicative DNA helicase -
  C7S04_RS03105 (WHOU_00552) pilH 520050..520712 (+) 663 WP_106176301.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7S04_RS03110 (WHOU_00553) pilI 520744..521361 (+) 618 WP_106176300.1 type IV pilus modification protein PilV Machinery gene
  C7S04_RS03115 (WHOU_00554) pilJ 521358..522290 (+) 933 WP_106333332.1 PilW family protein Machinery gene
  C7S04_RS03120 (WHOU_00555) pilK 522269..522880 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7S04_RS03125 (WHOU_00556) pilL 522882..523355 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  C7S04_RS03130 (WHOU_00557C) - 523425..523733 (-) 309 WP_025456241.1 AzlD family protein -
  C7S04_RS03135 - 523730..524441 (-) 712 Protein_526 AzlC family ABC transporter permease -
  C7S04_RS03140 (WHOU_00560) dut 524607..525059 (+) 453 WP_003701071.1 dUTP diphosphatase -
  C7S04_RS03145 (WHOU_00561) dapC 525131..526318 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  C7S04_RS03150 (WHOU_00562) yaaA 526474..527253 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22021.91 Da        Isoelectric Point: 8.0862

>NTDB_id=1144489 C7S04_RS03120 WP_012503481.1 522269..522880(+) (pilK) [Neisseria gonorrhoeae strain WHO_U]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1144489 C7S04_RS03120 WP_012503481.1 522269..522880(+) (pilK) [Neisseria gonorrhoeae strain WHO_U]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

96.059

100

0.961

Multiple sequence alignment