Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   C7S04_RS03105 Genome accession   NZ_LT592159
Coordinates   520050..520712 (+) Length   220 a.a.
NCBI ID   WP_106176301.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_U     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515050..525712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S04_RS03065 (WHOU_00547C) cysT 515168..516006 (-) 839 Protein_515 sulfate ABC transporter permease subunit CysT -
  C7S04_RS03070 (WHOU_00548) - 516192..516524 (+) 333 WP_003687908.1 hypothetical protein -
  C7S04_RS03075 (WHOU_00549) - 516851..517360 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  C7S04_RS03085 (WHOU_00550C) - 517592..518173 (-) 582 WP_003698180.1 superoxide dismutase -
  C7S04_RS03095 (WHOU_00551) dnaB 518336..519742 (+) 1407 WP_010359914.1 replicative DNA helicase -
  C7S04_RS03105 (WHOU_00552) pilH 520050..520712 (+) 663 WP_106176301.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7S04_RS03110 (WHOU_00553) pilI 520744..521361 (+) 618 WP_106176300.1 type IV pilus modification protein PilV Machinery gene
  C7S04_RS03115 (WHOU_00554) pilJ 521358..522290 (+) 933 WP_106333332.1 PilW family protein Machinery gene
  C7S04_RS03120 (WHOU_00555) pilK 522269..522880 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7S04_RS03125 (WHOU_00556) pilL 522882..523355 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  C7S04_RS03130 (WHOU_00557C) - 523425..523733 (-) 309 WP_025456241.1 AzlD family protein -
  C7S04_RS03135 - 523730..524441 (-) 712 Protein_526 AzlC family ABC transporter permease -
  C7S04_RS03140 (WHOU_00560) dut 524607..525059 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24466.92 Da        Isoelectric Point: 9.1565

>NTDB_id=1144486 C7S04_RS03105 WP_106176301.1 520050..520712(+) (pilH) [Neisseria gonorrhoeae strain WHO_U]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGRGMLAFGDKNGNKAYDGDEADVFLRSVVLNDTDDSRINYAFNHIAFGQIQPTAERVVWTFNQNGTFGYLSD
QNLKDNSKFVYSDGYIQIVLTDAKAVSVDEKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1144486 C7S04_RS03105 WP_106176301.1 520050..520712(+) (pilH) [Neisseria gonorrhoeae strain WHO_U]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGTGA
TGAGGCGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTCAAATACAGCCGACTGCCGAACGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGTCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGTTTC
TGTCGATGAAAAAAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

94.091

100

0.941

Multiple sequence alignment