Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   WHOZ_RS02770 Genome accession   NZ_LT592146
Coordinates   450822..451433 (+) Length   203 a.a.
NCBI ID   WP_047925982.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO O     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 445822..456433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHOZ_RS02730 (WHOO_00476) - 446267..446599 (+) 333 WP_003687908.1 hypothetical protein -
  WHOZ_RS02735 (WHOO_00477) - 446926..447435 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  WHOZ_RS02745 (WHOO_00478C) - 447667..448248 (-) 582 WP_047918049.1 superoxide dismutase -
  WHOZ_RS02755 (WHOO_00479) dnaB 448411..449817 (+) 1407 WP_003690896.1 replicative DNA helicase -
  WHOZ_RS02765 (WHOO_00480) pilH 450125..450790 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  WHOZ_RS02770 (WHOO_00481) pilV 450822..451433 (+) 612 WP_047925982.1 type IV pilus modification protein PilV Machinery gene
  WHOZ_RS02775 (WHOO_00482) pilJ 451430..452410 (+) 981 WP_047925983.1 PilW family protein Machinery gene
  WHOZ_RS02780 (WHOO_00483) pilK 452389..453000 (+) 612 WP_010951047.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WHOZ_RS02785 (WHOO_00484) pilL 453002..453475 (+) 474 WP_171000154.1 PilX family type IV pilin Machinery gene
  WHOZ_RS02790 (WHOO_00485C) - 453545..453853 (-) 309 WP_010951048.1 AzlD family protein -
  WHOZ_RS13375 - 453850..454558 (-) 709 Protein_457 AzlC family ABC transporter permease -
  WHOZ_RS02800 (WHOO_00488) dut 454724..455176 (+) 453 WP_047925987.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22050.04 Da        Isoelectric Point: 4.8546

>NTDB_id=1144252 WHOZ_RS02770 WP_047925982.1 450822..451433(+) (pilV) [Neisseria gonorrhoeae strain WHO O]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YSLYMGKQTLSAVDGKFMLDAEKSKAQLAEEQLKRFSHELKNALPDAVAIHYAVCKDSSGDAPTLSDSGAFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1144252 WHOZ_RS02770 WP_047925982.1 450822..451433(+) (pilV) [Neisseria gonorrhoeae strain WHO O]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACTATCAGCTGTGGATGGTAAGTTTATGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTCATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGACAGCGGTGCTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAAGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.855

100

0.916
  pilI Neisseria gonorrhoeae MS11

84.236

100

0.842
  pilV Neisseria gonorrhoeae MS11

84.236

100

0.842

Multiple sequence alignment