Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   WHOZ_RS02765 Genome accession   NZ_LT592146
Coordinates   450125..450790 (+) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO O     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445125..455790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHOZ_RS02725 (WHOO_00475C) cysT 445259..446086 (-) 828 WP_047919388.1 sulfate ABC transporter permease subunit CysT -
  WHOZ_RS02730 (WHOO_00476) - 446267..446599 (+) 333 WP_003687908.1 hypothetical protein -
  WHOZ_RS02735 (WHOO_00477) - 446926..447435 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  WHOZ_RS02745 (WHOO_00478C) - 447667..448248 (-) 582 WP_047918049.1 superoxide dismutase -
  WHOZ_RS02755 (WHOO_00479) dnaB 448411..449817 (+) 1407 WP_003690896.1 replicative DNA helicase -
  WHOZ_RS02765 (WHOO_00480) pilH 450125..450790 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  WHOZ_RS02770 (WHOO_00481) pilV 450822..451433 (+) 612 WP_047925982.1 type IV pilus modification protein PilV Machinery gene
  WHOZ_RS02775 (WHOO_00482) pilJ 451430..452410 (+) 981 WP_047925983.1 PilW family protein Machinery gene
  WHOZ_RS02780 (WHOO_00483) pilK 452389..453000 (+) 612 WP_010951047.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WHOZ_RS02785 (WHOO_00484) pilL 453002..453475 (+) 474 WP_171000154.1 PilX family type IV pilin Machinery gene
  WHOZ_RS02790 (WHOO_00485C) - 453545..453853 (-) 309 WP_010951048.1 AzlD family protein -
  WHOZ_RS13375 - 453850..454558 (-) 709 Protein_457 AzlC family ABC transporter permease -
  WHOZ_RS02800 (WHOO_00488) dut 454724..455176 (+) 453 WP_047925987.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=1144251 WHOZ_RS02765 WP_047918678.1 450125..450790(+) (pilH) [Neisseria gonorrhoeae strain WHO O]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1144251 WHOZ_RS02765 WP_047918678.1 450125..450790(+) (pilH) [Neisseria gonorrhoeae strain WHO O]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869

Multiple sequence alignment