Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   E4V86_RS10340 Genome accession   NZ_LT591910
Coordinates   1759112..1759498 (+) Length   128 a.a.
NCBI ID   WP_269472850.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO N     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1754112..1764498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4V86_RS10310 (WHON_01928) metG 1754233..1756287 (+) 2055 WP_047951312.1 methionine--tRNA ligase -
  E4V86_RS10315 (WHON_01929C) - 1756362..1756676 (-) 315 Protein_1783 NAD(P)-dependent oxidoreductase -
  E4V86_RS10320 - 1756674..1757012 (+) 339 Protein_1784 pilin -
  E4V86_RS10325 (WHON_01931) - 1757476..1757889 (+) 414 Protein_1785 pilin -
  E4V86_RS10330 (WHON_01932) pilE 1757928..1758314 (+) 387 WP_269472849.1 pilin Machinery gene
  E4V86_RS10335 (WHON_01933) - 1758371..1758760 (+) 390 Protein_1787 pilin -
  E4V86_RS10340 (WHON_01934) pilE 1759112..1759498 (+) 387 WP_269472850.1 pilin Machinery gene
  E4V86_RS10345 (WHON_01935C) thiC 1759940..1761841 (-) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  E4V86_RS10360 (WHON_01938) - 1762439..1763314 (+) 876 WP_003686971.1 NUDIX hydrolase -
  E4V86_RS10365 (WHON_01939) - 1763323..1764264 (+) 942 WP_003686969.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 13877.68 Da        Isoelectric Point: 10.1330

>NTDB_id=1144231 E4V86_RS10340 WP_269472850.1 1759112..1759498(+) (pilE) [Neisseria gonorrhoeae strain WHO N]
MPAGILKHRPKKSAVAGYCPNHGKWPENNTSAGVASPPSDIKGKYVKEVEVKNGVVTATMASSNVNKEIKDKRLSLWAKR
ENGSVKWFCGQPVKRTANNNDDVAKDGTDKIETKHLPSTCRDESTAGT

Nucleotide


Download         Length: 387 bp        

>NTDB_id=1144231 E4V86_RS10340 WP_269472850.1 1759112..1759498(+) (pilE) [Neisseria gonorrhoeae strain WHO N]
TTGCCCGCCGGAATATTAAAACACCGCCCAAAAAAATCAGCCGTTGCCGGGTATTGCCCGAATCACGGCAAATGGCCGGA
AAACAACACTTCTGCCGGCGTGGCATCCCCCCCCTCCGACATCAAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACG
GCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGT
GAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCACCGCCAACAACAACGACGACGTCGCCAAAGACGG
CACCGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTGATGAATCAACTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

72.131

95.313

0.687
  pilE Neisseria gonorrhoeae strain FA1090

68.293

96.094

0.656

Multiple sequence alignment