Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   E4V86_RS10330 Genome accession   NZ_LT591910
Coordinates   1757928..1758314 (+) Length   128 a.a.
NCBI ID   WP_269472849.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO N     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1752928..1763314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4V86_RS10310 (WHON_01928) metG 1754233..1756287 (+) 2055 WP_047951312.1 methionine--tRNA ligase -
  E4V86_RS10315 (WHON_01929C) - 1756362..1756676 (-) 315 Protein_1783 NAD(P)-dependent oxidoreductase -
  E4V86_RS10320 - 1756674..1757012 (+) 339 Protein_1784 pilin -
  E4V86_RS10325 (WHON_01931) - 1757476..1757889 (+) 414 Protein_1785 pilin -
  E4V86_RS10330 (WHON_01932) pilE 1757928..1758314 (+) 387 WP_269472849.1 pilin Machinery gene
  E4V86_RS10335 (WHON_01933) - 1758371..1758760 (+) 390 Protein_1787 pilin -
  E4V86_RS10340 (WHON_01934) pilE 1759112..1759498 (+) 387 WP_269472850.1 pilin Machinery gene
  E4V86_RS10345 (WHON_01935C) thiC 1759940..1761841 (-) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  E4V86_RS10360 (WHON_01938) - 1762439..1763314 (+) 876 WP_003686971.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14058.16 Da        Isoelectric Point: 10.9555

>NTDB_id=1144230 E4V86_RS10330 WP_269472849.1 1757928..1758314(+) (pilE) [Neisseria gonorrhoeae strain WHO N]
MASSDKIKGKYVQSVTVAKGVVTAQMASTGVNKEIKDKRLSLWARRQDGSVKWFCGQPVKRADKANDTVADATGKDNGIN
TKHLPSTCRDKSSAGCTKHHLRLSIKIPKPSFPRTYIPSFPRKRESGT

Nucleotide


Download         Length: 387 bp        

>NTDB_id=1144230 E4V86_RS10330 WP_269472849.1 1757928..1758314(+) (pilE) [Neisseria gonorrhoeae strain WHO N]
GTGGCATCCTCCGACAAAATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTAAGCGCGCCGACAAAGCCAACGACACCGTTGCCGACGCCACCGGCAAAGACAACGGCATCAAC
ACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATCTGCCGGTTGCACGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAAACCGTCATTCCCACGAACCTACATCCCGTCATTCCCACGAAAGCGGGAATCCGGAACGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.596

73.438

0.563
  pilE Neisseria gonorrhoeae MS11

71.591

68.75

0.492

Multiple sequence alignment