Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7R98_RS10465 Genome accession   NZ_LT591904
Coordinates   1764801..1765220 (+) Length   139 a.a.
NCBI ID   WP_106176324.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO M     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1759801..1770220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R98_RS10425 (WHOM_01934) metG 1760023..1762077 (+) 2055 WP_106176355.1 methionine--tRNA ligase -
  C7R98_RS10430 (WHOM_01935C) - 1762152..1762466 (-) 315 Protein_1786 NAD(P)-dependent oxidoreductase -
  C7R98_RS10435 (WHOM_01936) - 1762464..1762796 (+) 333 Protein_1787 pilin -
  C7R98_RS10440 (WHOM_01937) - 1762823..1763178 (+) 356 Protein_1788 pilin -
  C7R98_RS10445 (WHOM_01938) pilE 1763592..1764080 (+) 489 WP_269472471.1 pilin Machinery gene
  C7R98_RS14650 - 1764062..1764397 (+) 336 Protein_1790 pilin -
  C7R98_RS10465 (WHOM_01940) pilE 1764801..1765220 (+) 420 WP_106176324.1 pilin Machinery gene
  C7R98_RS10470 (WHOM_01941C) thiC 1765708..1767609 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  C7R98_RS10485 (WHOM_01944) - 1768207..1769082 (+) 876 WP_003686971.1 NUDIX hydrolase -
  C7R98_RS10490 (WHOM_01945) - 1769091..1770032 (+) 942 WP_003686969.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15098.90 Da        Isoelectric Point: 9.0148

>NTDB_id=1144135 C7R98_RS10465 WP_106176324.1 1764801..1765220(+) (pilE) [Neisseria gonorrhoeae strain WHO M]
MPTRLDSRLRGNDEAILLAEGQKSAVTGYYLNHGTWPKDNTSAGVASSPTDIKGKYVQSVTVAKGVVTAKMKSDGVNKEI
KGKKLSLWAKRQAGSVKWFCGQPVKRTGDNDDDVTADKDDKEIDTKHLPSTCRDESSAE

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1144135 C7R98_RS10465 WP_106176324.1 1764801..1765220(+) (pilE) [Neisseria gonorrhoeae strain WHO M]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGGGTATTACCTGAATCACGGCACATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCTCCCCCACCGACATCAAAG
GCAAATATGTTCAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCAAAATGAAATCAGACGGCGTAAACAAAGAAATC
AAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCAC
CGGCGACAACGACGACGACGTTACCGCCGACAAAGACGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCG
ATGAATCATCTGCCGAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.978

100

0.77
  pilE Neisseria gonorrhoeae MS11

71.223

100

0.712

Multiple sequence alignment