Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7R98_RS10445 Genome accession   NZ_LT591904
Coordinates   1763592..1764080 (+) Length   162 a.a.
NCBI ID   WP_269472471.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO M     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1758592..1769080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R98_RS10425 (WHOM_01934) metG 1760023..1762077 (+) 2055 WP_106176355.1 methionine--tRNA ligase -
  C7R98_RS10430 (WHOM_01935C) - 1762152..1762466 (-) 315 Protein_1786 NAD(P)-dependent oxidoreductase -
  C7R98_RS10435 (WHOM_01936) - 1762464..1762796 (+) 333 Protein_1787 pilin -
  C7R98_RS10440 (WHOM_01937) - 1762823..1763178 (+) 356 Protein_1788 pilin -
  C7R98_RS10445 (WHOM_01938) pilE 1763592..1764080 (+) 489 WP_269472471.1 pilin Machinery gene
  C7R98_RS14650 - 1764062..1764397 (+) 336 Protein_1790 pilin -
  C7R98_RS10465 (WHOM_01940) pilE 1764801..1765220 (+) 420 WP_106176324.1 pilin Machinery gene
  C7R98_RS10470 (WHOM_01941C) thiC 1765708..1767609 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17714.07 Da        Isoelectric Point: 9.8038

>NTDB_id=1144134 C7R98_RS10445 WP_269472471.1 1763592..1764080(+) (pilE) [Neisseria gonorrhoeae strain WHO M]
MGIRNVKSKETVLPDKFPYRQTRIPARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNDSAGVASPPSNIKGKYVESVTV
ENGVVTAKMLSSGVNKEIQGKKLSLWAKREAGSVKWFCGRPVKRDAKDGTDDVAKDGKDNEKIDTKHLPSTCRDESSLPG
IA

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1144134 C7R98_RS10445 WP_269472471.1 1763592..1764080(+) (pilE) [Neisseria gonorrhoeae strain WHO M]
GTGGGAATCCGGAACGTAAAATCTAAAGAAACCGTTTTACCCGATAAGTTTCCGTACCGACAGACCCGGATTCCCGCCCG
CGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAAT
GGCCGGAAAACAACGACTCTGCCGGCGTGGCATCCCCCCCCTCCAACATCAAAGGCAAATATGTTGAAAGCGTTACGGTC
GAAAACGGCGTCGTTACCGCCAAAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTATCCCTGTGGGC
CAAGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTAAGCGCGACGCCAAAGACGGCACCGACGACGTCG
CCAAAGACGGCAAAGACAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCGTTGCCGGGT
ATTGCCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(26-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

77.273

81.481

0.63
  pilE Neisseria gonorrhoeae strain FA1090

74.242

81.481

0.605

Multiple sequence alignment