Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7R98_RS10300 Genome accession   NZ_LT591904
Coordinates   1739846..1740250 (+) Length   134 a.a.
NCBI ID   WP_148699034.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO M     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1734846..1745250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R98_RS10265 (WHOM_01907) pilE 1735258..1735677 (+) 420 WP_115115831.1 pilin Machinery gene
  C7R98_RS10270 (WHOM_01908) - 1735704..1736108 (+) 405 Protein_1759 pilin -
  C7R98_RS10275 (WHOM_01909) - 1736489..1736893 (+) 405 Protein_1760 pilin -
  C7R98_RS10280 (WHOM_01910) - 1737014..1737382 (+) 369 Protein_1761 pilin -
  C7R98_RS10290 (WHOM_01911) - 1737917..1738315 (+) 399 Protein_1762 pilin -
  C7R98_RS10295 (WHOM_01912) lpxC 1738817..1739740 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  C7R98_RS10300 (WHOM_01913) pilE 1739846..1740250 (+) 405 WP_148699034.1 pilin Machinery gene
  C7R98_RS14450 - 1740388..1740491 (+) 104 Protein_1765 pilin -
  C7R98_RS14645 - 1741307..1741415 (+) 109 Protein_1766 pilin -
  C7R98_RS14285 - 1741472..1741828 (+) 357 Protein_1767 pilin -
  C7R98_RS10325 (WHOM_01915) - 1742362..1743165 (+) 804 WP_115115827.1 opacity family porin -
  C7R98_RS13695 (WHOM_01916C) - 1743139..1743426 (-) 288 WP_171000236.1 hypothetical protein -
  C7R98_RS10335 (WHOM_01917C) pilA 1743433..1744686 (-) 1254 WP_047920694.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14452.97 Da        Isoelectric Point: 5.2310

>NTDB_id=1144132 C7R98_RS10300 WP_148699034.1 1739846..1740250(+) (pilE) [Neisseria gonorrhoeae strain WHO M]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPENNGDAGVASSSSIIGKYVEEVKVENGVVTAQMASSGVNKEIK
DKKLSLWAKRQDGSVKWFCGQPVTRNGDTVADANDGIDTKHLPSTCRDKASDAN

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1144132 C7R98_RS10300 WP_148699034.1 1739846..1740250(+) (pilE) [Neisseria gonorrhoeae strain WHO M]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGATGCCGGCGTGGCATCTTCTTCATCAATCATAGGCA
AATATGTTGAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAAGCGGCGTAAACAAAGAAATCAAA
GACAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAACGG
CGACACCGTTGCCGACGCCAACGACGGCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTGATGCCA
ACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

74.638

100

0.769
  pilE Neisseria gonorrhoeae strain FA1090

74.815

100

0.754

Multiple sequence alignment