Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilL   Type   Machinery gene
Locus tag   C7S00_RS07685 Genome accession   NZ_LT591901
Coordinates   1318847..1319320 (-) Length   157 a.a.
NCBI ID   WP_172616930.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO L     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1313847..1324320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S00_RS07660 (WHOL_01434C) yaaA 1314949..1315728 (-) 780 WP_003687925.1 peroxide stress protein YaaA -
  C7S00_RS07665 (WHOL_01435C) dapC 1315884..1317071 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  C7S00_RS07670 (WHOL_01436C) dut 1317143..1317595 (-) 453 WP_003702446.1 dUTP diphosphatase -
  C7S00_RS07675 - 1317761..1318472 (+) 712 Protein_1323 AzlC family ABC transporter permease -
  C7S00_RS07680 (WHOL_01439) - 1318469..1318777 (+) 309 WP_047921007.1 AzlD family protein -
  C7S00_RS07685 (WHOL_01440C) pilL 1318847..1319320 (-) 474 WP_172616930.1 PilX family type IV pilin Machinery gene
  C7S00_RS07690 (WHOL_01441C) pilK 1319322..1319930 (-) 609 WP_047921003.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7S00_RS07695 (WHOL_01442C) pilJ 1319909..1320844 (-) 936 WP_047921001.1 PilW family protein Machinery gene
  C7S00_RS07700 (WHOL_01443C) pilI 1320841..1321449 (-) 609 WP_047920999.1 type IV pilus modification protein PilV Machinery gene
  C7S00_RS07705 (WHOL_01444C) pilH 1321481..1322146 (-) 666 WP_047921008.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7S00_RS07710 (WHOL_01445C) dnaB 1322454..1323860 (-) 1407 WP_047920816.1 replicative DNA helicase -

Sequence


Protein


Download         Length: 157 a.a.        Molecular weight: 17616.44 Da        Isoelectric Point: 9.1635

>NTDB_id=1144069 C7S00_RS07685 WP_172616930.1 1318847..1319320(-) (pilL) [Neisseria gonorrhoeae strain WHO L]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVLGYKM
NPKIAKKYSVSVKFVDAEKPRVYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAWVYSDTLSADSGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1144069 C7S00_RS07685 WP_172616930.1 1318847..1319320(-) (pilL) [Neisseria gonorrhoeae strain WHO L]
ATGGAGCAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATGCGGAAAAACCAAGGGTATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCTGGGTCTATTCGGACACCTTGTCCGCAGATAGCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

94.268

100

0.943

  pilX Neisseria meningitidis 8013

83.439

100

0.834


Multiple sequence alignment