Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   T479_RS22580 Genome accession   NZ_CP006837
Coordinates   4646025..4646597 (-) Length   190 a.a.
NCBI ID   WP_024364645.1    Uniprot ID   A0A4U2Z4N7
Organism   Lysinibacillus varians strain GY32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4641025..4651597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T479_RS22555 (T479_23595) - 4641321..4642262 (-) 942 WP_025220902.1 YybS family protein -
  T479_RS22560 (T479_23600) - 4642549..4643214 (-) 666 WP_081769939.1 ABC transporter ATP-binding protein -
  T479_RS22565 (T479_23605) - 4643207..4644493 (-) 1287 WP_025220904.1 hypothetical protein -
  T479_RS22570 (T479_23610) - 4644490..4645422 (-) 933 WP_137036921.1 hypothetical protein -
  T479_RS22575 (T479_23620) rpsR 4645741..4645977 (-) 237 WP_024364646.1 30S ribosomal protein S18 -
  T479_RS22580 (T479_23625) ssbA 4646025..4646597 (-) 573 WP_024364645.1 single-stranded DNA-binding protein Machinery gene
  T479_RS22585 (T479_23630) rpsF 4646634..4646924 (-) 291 WP_024364644.1 30S ribosomal protein S6 -
  T479_RS22590 (T479_23635) - 4647098..4647661 (+) 564 WP_024364643.1 DUF3267 domain-containing protein -
  T479_RS22595 (T479_23640) - 4647688..4648728 (-) 1041 WP_025220906.1 acyl-CoA dehydrogenase family protein -
  T479_RS22600 (T479_23645) ychF 4648898..4649998 (-) 1101 WP_024364641.1 redox-regulated ATPase YchF -
  T479_RS22605 (T479_23655) - 4650354..4650554 (-) 201 WP_024364640.1 DUF951 domain-containing protein -
  T479_RS22610 (T479_23660) - 4650556..4651437 (-) 882 WP_025220907.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20599.61 Da        Isoelectric Point: 4.9533

>NTDB_id=114402 T479_RS22580 WP_024364645.1 4646025..4646597(-) (ssbA) [Lysinibacillus varians strain GY32]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRTFSNQQGEKEADFISCVAWRKQAENLANFMKKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGGGAPASNQYGGQSYANSQPSYGGGQPQQQYGGAMPQQGSFGGGASYQQNQPP
MNQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=114402 T479_RS22580 WP_024364645.1 4646025..4646597(-) (ssbA) [Lysinibacillus varians strain GY32]
ATGATAAATCGTGTCGTATTAGTTGGAAGACTAACAAAAGACCCTGAGCTGCGCTACACACCGAATGGTATTGCGTCTAC
TCGATTTACAGTAGCTGTGAATCGTACATTCTCAAACCAACAAGGTGAAAAAGAAGCAGATTTCATTAGCTGCGTTGCTT
GGCGTAAACAGGCTGAAAACTTAGCGAACTTCATGAAAAAAGGAAGTTTGATTGGAGTAGAAGGTCGTATCCAAACAGGT
AGCTATGAAGGACAAGATGGTAAGCGTGTATATACAACTGATGTTGTGGCAGATAGCGTACAGTTTTTAGAGCCTCGTAG
TGGTGGAGGTGCTCCTGCATCGAACCAATACGGCGGACAATCTTACGCTAATAGCCAGCCGTCATATGGCGGTGGACAAC
CACAACAACAGTATGGTGGCGCGATGCCTCAGCAAGGTTCATTTGGCGGCGGTGCTTCTTATCAGCAAAATCAACCACCA
ATGAATCAGCCGAACTATACACGAGTAGACGAAGATCCATTTGCGAATAGCAAGGGACCGATTGAAGTATCAGAAGACGA
TCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2Z4N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.737

100

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

48.969

100

0.5

Multiple sequence alignment