Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   A8Q77_RS05635 Genome accession   NZ_LT571436
Coordinates   1219904..1222072 (+) Length   722 a.a.
NCBI ID   WP_064130656.1    Uniprot ID   -
Organism   Neisseria weaveri strain NCTC13585     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1214904..1227072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8Q77_RS05615 (SAMEA3174300_01122) pilM 1217018..1218100 (+) 1083 WP_064130654.1 type IV pilus assembly protein PilM -
  A8Q77_RS05620 (SAMEA3174300_01123) - 1218102..1218683 (+) 582 WP_004285027.1 PilN domain-containing protein -
  A8Q77_RS05625 (SAMEA3174300_01124) - 1218686..1219321 (+) 636 WP_004285026.1 type 4a pilus biogenesis protein PilO -
  A8Q77_RS05630 (SAMEA3174300_01125) pilP 1219343..1219882 (+) 540 WP_414858967.1 pilus assembly protein PilP Machinery gene
  A8Q77_RS05635 (SAMEA3174300_01126) pilQ 1219904..1222072 (+) 2169 WP_064130656.1 type IV pilus secretin PilQ Machinery gene
  A8Q77_RS05640 (SAMEA3174300_01127) - 1222135..1222668 (+) 534 WP_064130657.1 shikimate kinase -
  A8Q77_RS05645 (SAMEA3174300_01128) aroB 1222673..1223755 (+) 1083 WP_004285022.1 3-dehydroquinate synthase -
  A8Q77_RS05650 (SAMEA3174300_01129) - 1223863..1224621 (-) 759 WP_172795974.1 TatD family hydrolase -
  A8Q77_RS05655 (SAMEA3174300_01130) - 1224698..1225606 (-) 909 WP_172795975.1 Dyp-type peroxidase -
  A8Q77_RS05660 (SAMEA3174300_01131) - 1226093..1226884 (+) 792 WP_004285019.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 79481.83 Da        Isoelectric Point: 9.8245

>NTDB_id=1143800 A8Q77_RS05635 WP_064130656.1 1219904..1222072(+) (pilQ) [Neisseria weaveri strain NCTC13585]
MKPGNFQALSAIGLMFTAMHSAMAGNITDINVSSLPDNQKIIKITFDKDPINPSGFVTSTPARIALDFTGTDIKLANPVL
EYADPLLNQITSAQNNNRARLLLGLNKAGQYNTEIKGNEVWVYIKEAPSSTQSKAAPIQTNAYINEQNHKARKPSEQIIA
TANIDFRKGAQNSGIVEFNAPAFSGQPDIKQQQDRLIVTLKNYPITAQSQRSIDVRDFNTPVHNVTMKRLGNNTQLVIKN
QGSWAFKTQNANGRFQFEITQKSNLSTQGVPGNVNKAFNGRKISLDFQNVEVRTILQILAKESGTNIVASDSVNGKMTLT
LKDVPWDQALDLVMQARNLDMRKQGNIINIAPREELLAKDKSTLQAQKEIEELGPLFSQTFQLKYKNVEEFRKILRLDEK
SSSQNNNSNTLLSSRGSALIDPSTNTLILTDNSNVIRKFQKLIDELDVPTRQVMVEARIVEAKDGFSRSLGAKFGYTANT
SRNSWGSNWSNAVNNQGTHVTNQYNRARDQINGTLTNPEPFSMNPNVNLPAAAATSSIALVRSIASGALGLELSAMQEQN
RGKIISNPRVLTQDRKEATIESGTEIPYQQSTSSGATSVSFKKAVLGLTVTPNITPDGQVIMNIKINKDNPNECGIVDGQ
QTLCVSTKRLETQAMVEDGGTLIVGGIYEEENTNTVNQVPLLGDIPVLGNLFKTRSRNEARKELLIFITPRIMDNQGSNL
RY

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=1143800 A8Q77_RS05635 WP_064130656.1 1219904..1222072(+) (pilQ) [Neisseria weaveri strain NCTC13585]
ATGAAACCAGGAAATTTTCAAGCTCTTTCAGCAATAGGTTTAATGTTTACTGCCATGCATTCCGCTATGGCTGGCAATAT
TACAGATATTAACGTATCCAGTTTGCCTGATAACCAAAAAATTATCAAAATTACTTTTGATAAAGATCCTATTAATCCAA
GCGGTTTTGTTACTTCAACACCTGCCCGTATTGCTTTAGATTTTACCGGTACGGATATCAAGCTAGCGAACCCTGTATTG
GAGTATGCAGATCCCTTACTAAATCAAATCACAAGTGCCCAAAATAATAATCGTGCACGGCTTCTGTTAGGCTTAAATAA
AGCCGGGCAATACAATACCGAAATCAAAGGTAATGAAGTTTGGGTTTATATTAAAGAAGCCCCCAGCTCAACTCAGTCTA
AAGCCGCACCAATTCAAACCAATGCATATATAAATGAGCAAAATCATAAGGCCCGTAAGCCATCTGAGCAAATTATCGCG
ACAGCTAATATAGATTTCAGAAAAGGCGCACAAAATTCCGGTATTGTCGAATTTAACGCACCTGCATTCTCCGGACAGCC
GGATATTAAACAACAGCAAGACCGATTAATCGTTACTTTAAAGAATTATCCGATTACGGCCCAATCTCAAAGAAGTATCG
ATGTTCGTGACTTCAATACGCCTGTACATAATGTAACCATGAAACGACTGGGTAATAACACTCAGCTTGTCATCAAAAAC
CAAGGAAGCTGGGCTTTCAAAACGCAAAATGCCAATGGCCGCTTCCAATTTGAGATTACTCAGAAGAGTAATCTCTCTAC
CCAAGGCGTACCCGGAAATGTCAATAAAGCATTTAACGGTAGAAAAATTTCTTTAGACTTCCAAAATGTTGAAGTTAGAA
CAATTTTGCAGATTTTGGCAAAAGAATCCGGTACCAATATCGTAGCGAGCGATAGCGTTAACGGAAAAATGACTTTAACT
TTAAAAGATGTGCCTTGGGATCAGGCCTTAGATTTGGTTATGCAGGCCCGCAATTTAGATATGCGCAAACAAGGCAATAT
CATTAATATTGCTCCTAGAGAAGAGCTGTTGGCAAAAGATAAGTCGACACTGCAAGCTCAAAAAGAAATTGAAGAGCTGG
GTCCACTATTTTCTCAAACATTCCAATTAAAATATAAAAACGTAGAAGAATTCAGAAAAATTTTACGTTTGGATGAGAAA
AGCAGCAGTCAAAATAATAATTCCAATACATTATTGAGCAGCCGTGGCAGTGCTTTAATTGATCCAAGCACGAACACTTT
GATCTTAACGGACAACAGCAATGTTATCCGGAAATTCCAAAAACTGATTGACGAACTGGATGTACCTACCCGTCAAGTGA
TGGTAGAGGCTCGTATTGTTGAAGCTAAAGACGGTTTCTCACGCAGTTTGGGGGCTAAATTTGGTTACACTGCCAATACT
TCCCGTAACAGCTGGGGATCCAATTGGAGTAATGCCGTTAATAATCAAGGAACACACGTTACCAACCAATATAACCGCGC
TAGGGATCAAATTAACGGCACATTGACGAATCCCGAACCTTTCTCCATGAATCCTAATGTGAATCTACCGGCAGCAGCGG
CAACCAGCAGTATCGCTTTGGTACGTTCTATCGCTTCAGGCGCTTTGGGATTGGAATTATCCGCAATGCAAGAACAAAAC
CGCGGGAAAATTATTTCTAATCCAAGAGTGTTAACTCAGGATAGAAAAGAAGCAACCATCGAATCCGGTACCGAAATTCC
TTATCAGCAATCCACGTCGAGTGGTGCCACTTCGGTATCGTTCAAAAAAGCCGTATTGGGTTTAACCGTTACACCCAACA
TCACTCCGGACGGTCAGGTTATTATGAATATCAAAATCAACAAAGATAACCCCAATGAGTGTGGCATTGTCGATGGCCAA
CAAACCTTGTGTGTCAGCACCAAGCGCCTGGAAACCCAAGCCATGGTTGAGGATGGCGGTACATTAATCGTCGGAGGTAT
TTATGAAGAAGAAAATACCAACACTGTCAACCAAGTTCCTTTATTGGGCGATATCCCGGTTTTAGGCAATCTGTTTAAAA
CCAGATCGCGCAATGAAGCTCGCAAGGAATTGCTGATTTTCATCACACCCCGCATCATGGATAATCAAGGCAGCAATCTT
CGTTATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(379-452)

AMIN domain (AMIN)

(37-115)

Bacterial type II and III secretion system protein (Secretin)

(555-714)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

57.661

100

0.594
  pilQ Neisseria meningitidis MC58

61.014

79.224

0.483
  pilQ Neisseria meningitidis M1080

60.839

79.224

0.482

Multiple sequence alignment