Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PCPL58_RS05585 Genome accession   NZ_LT222319
Coordinates   688852..690189 (-) Length   445 a.a.
NCBI ID   WP_065348988.1    Uniprot ID   A0A193SJ85
Organism   Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 683852..695189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCPL58_RS05570 (PCPL58_0626) - 683983..687180 (+) 3198 WP_065348985.1 pilus assembly protein -
  PCPL58_RS05575 (PCPL58_0627) - 687192..687593 (+) 402 WP_065348986.1 type IV pilin protein -
  PCPL58_RS05580 (PCPL58_0628) thiO 687619..688722 (+) 1104 WP_065348987.1 glycine oxidase ThiO -
  PCPL58_RS05585 (PCPL58_0629) pilR 688852..690189 (-) 1338 WP_065348988.1 sigma-54-dependent transcriptional regulator Regulator
  PCPL58_RS05590 (PCPL58_0630) pilS 690192..691784 (-) 1593 WP_065348989.1 sensor histidine kinase Regulator
  PCPL58_RS05595 (PCPL58_0631) - 691774..692013 (-) 240 WP_032609810.1 PP0621 family protein -
  PCPL58_RS05600 (PCPL58_0632) - 692134..693156 (-) 1023 WP_003371138.1 outer membrane protein assembly factor BamD -
  PCPL58_RS05605 (PCPL58_0633) rluD 693306..694268 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCPL58_RS05610 (PCPL58_0634) pgeF 694265..694993 (+) 729 WP_065348990.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49734.72 Da        Isoelectric Point: 6.2986

>NTDB_id=1143640 PCPL58_RS05585 WP_065348988.1 688852..690189(-) (pilR) [Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPPLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPNLADIDNLED
YLESIERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1143640 PCPL58_RS05585 WP_065348988.1 688852..690189(-) (pilR) [Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGGCGCAT
GAAACTCGACACCCGCAGTGCCCGTAACGTCGCCGAAGCGCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTTTGCCTGACGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAATCTGGACACGGCGATCAACGCGCTGAAGGCCGGGGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAGCTGGTCAACAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAGCTGATGGAGAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGTCAGCAAGAGCAGATTGT
CGACGTACGTATTCTGTGTGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTTCGTCAGGATCTTTATT
ACCGATTGAACGTGATCGAAGTGCGTGTGCCCCCGTTGCGCGAGCGCCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCACGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGATGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGACGGCCCGAACCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCATCGAACGCCAGCTCATCCTGCAGGCACTGGAAGAAACACGCTGGAATCGCACTGCGGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A193SJ85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.652

99.551

0.773
  pilR Acinetobacter baumannii strain A118

49.244

100

0.512
  luxO Vibrio cholerae strain A1552

37.838

99.775

0.378

Multiple sequence alignment