Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AC2117_RS17570 Genome accession   NZ_LS999521
Coordinates   3670647..3672068 (+) Length   473 a.a.
NCBI ID   WP_133975776.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3665647..3677068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC2117_RS17550 (AC2117_03480) thrC 3665901..3667040 (+) 1140 WP_133975772.1 threonine synthase -
  AC2117_RS17555 (AC2117_03481) pbpG 3667149..3668195 (-) 1047 WP_133975774.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AC2117_RS17560 (AC2117_03482) - 3668408..3669043 (+) 636 WP_042894320.1 response regulator -
  AC2117_RS17565 (AC2117_03483) pilS 3669054..3670622 (+) 1569 WP_227549213.1 sensor histidine kinase Regulator
  AC2117_RS17570 (AC2117_03484) pilR 3670647..3672068 (+) 1422 WP_133975776.1 sigma-54-dependent transcriptional regulator Regulator
  AC2117_RS17575 (AC2117_03485) - 3672073..3673257 (-) 1185 WP_133975778.1 S41 family peptidase -
  AC2117_RS17580 (AC2117_03486) gpmI 3673273..3674820 (-) 1548 WP_133975779.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AC2117_RS17585 (AC2117_03487) lptG 3674947..3676017 (-) 1071 WP_133975781.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53084.26 Da        Isoelectric Point: 6.3463

>NTDB_id=1143511 AC2117_RS17570 WP_133975776.1 3670647..3672068(+) (pilR) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYSHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRIAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPAELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVRQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LAHHFIQKVCLEWEVPSKQLTTTAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLSHLNTTLLRSSSVNSQITTKPV
NDTSTAIAQARPKLPMEGLERYLENIEKDILLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1143511 AC2117_RS17570 WP_133975776.1 3670647..3672068(+) (pilR) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
ATGGCAGAACAGCAACCACTAGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCGCG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TAACCGATTTAAACCTACCCGACGGTAGCGGTTTAGAATTAGTTAAACATGTTTCTCAAACTTATTCTCACACACCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCGTTAAAGGCGGGAGCTTTTGACTTTGTAAGTAAACC
TATTAACCAAATTCATTTAGATCAGTTATTAAAAAAAGCGCTAAATCAGCCAAAACCAGAGCATGAGTTCGGTGAAACAA
CGTTGGAAAATGACCTATTAATCGGACGTTCTCCACCGATACAAAACTTGCGTATTGCTATAAAAAAAATAGCTCGTTCC
CAAGCTCCTGTGTTTGTTACAGGGGAATCCGGTACAGGTAAAGAAGTTGTTGCTAATCTTATTCACCGTTTGAGTAACCG
CAGCGAAGGTCCATTTATTGCGATTAACTGTGGAGCAATTCCAGCTGAGCTCATGGAAAGTGAACTTTTTGGGCATAAAA
AAGGTAGTTTTACTGGAGCGACCCAAGACAAACAAGGCCTTATTTTATCCGCTCATGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAATATGCAGGTTAAATTACTTCGCGCAGTACAAGAGAAAAAAATTCGCCCTGTAGGTTCAGA
TCAGGAAATCGATGTTGATTTTCGGGTGATCAGCGCCAGCCACCAAGATTTAGAGTTATTAGTCCGACAAGGCAAATTCC
GTCAGGACTTATTTTTCCGTATCCATGTTATGGATATCATGTTGCCACCACTGCGTGAGCGCGGTGGCGATATTTTGTTA
TTAGCCCATCACTTTATTCAAAAGGTTTGTCTGGAATGGGAAGTTCCAAGTAAACAATTAACCACGACTGCTGAAACTTA
TCTATTGCAGCAAGATTTTCCGGGTAATGTCCGTGAATTAAGAAATATGATCGAACGCGCTATTACCTTAAGTGATGATG
AATGTATTGATTTATCACACTTGAATACGACTCTTCTCAGAAGCAGTAGCGTTAACTCGCAAATCACCACTAAACCAGTG
AATGACACATCAACTGCGATTGCTCAGGCTCGACCAAAATTACCAATGGAAGGCTTAGAACGCTACTTAGAAAATATTGA
AAAAGATATTCTGCTAAATGCATTGGACATGACACATTGGAACCGGACCTTAGCAGCTAAAAAGCTAGGAATGACCTTTC
GCTCTTTACGCTATCGACTGAAAAAGTTTGGCTTAGATACTGAATTAGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.835

100

0.858
  pilR Pseudomonas aeruginosa PAK

50.109

97.04

0.486

Multiple sequence alignment