Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AC2117_RS17565 Genome accession   NZ_LS999521
Coordinates   3669054..3670622 (+) Length   522 a.a.
NCBI ID   WP_227549213.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3664054..3675622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC2117_RS17545 (AC2117_03479) - 3664545..3665846 (+) 1302 WP_133975770.1 homoserine dehydrogenase -
  AC2117_RS17550 (AC2117_03480) thrC 3665901..3667040 (+) 1140 WP_133975772.1 threonine synthase -
  AC2117_RS17555 (AC2117_03481) pbpG 3667149..3668195 (-) 1047 WP_133975774.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AC2117_RS17560 (AC2117_03482) - 3668408..3669043 (+) 636 WP_042894320.1 response regulator -
  AC2117_RS17565 (AC2117_03483) pilS 3669054..3670622 (+) 1569 WP_227549213.1 sensor histidine kinase Regulator
  AC2117_RS17570 (AC2117_03484) pilR 3670647..3672068 (+) 1422 WP_133975776.1 sigma-54-dependent transcriptional regulator Regulator
  AC2117_RS17575 (AC2117_03485) - 3672073..3673257 (-) 1185 WP_133975778.1 S41 family peptidase -
  AC2117_RS17580 (AC2117_03486) gpmI 3673273..3674820 (-) 1548 WP_133975779.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 58915.47 Da        Isoelectric Point: 6.6139

>NTDB_id=1143510 AC2117_RS17565 WP_227549213.1 3669054..3670622(+) (pilS) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSILSLLQLLCFKFVATQATKQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHPDLFEILKFGNLQEGDRFIFESKLSAYSINIKVQHLVVPQQALTLLILQDAQHINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDFEQQNTLRRMIGKQTKRIDSIVQDTLGLASSERTHPIQIELNDFIKTLLDEDLSDVK
HSIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPHVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRMACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1143510 AC2117_RS17565 WP_227549213.1 3669054..3670622(+) (pilS) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
ATGCAATTTCCCTTAAACTCATCGTTGTCCCATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAGCAACCCGCTTTATATTCTT
ACACACTGCTTGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTGTTGCAACTCAGGCAACAAAGCAG
CTTATTTTATTTTTTGTAGTTGATGTTATCTGCCTAAGTTTACTTACATTTTCTGTAGGTGAGCCAAATCTACAACTCAG
CTTGCTGTATGTTATTGCTATATTCACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCGG
TCATTGCCGTTATTTACCAACGTTTTGTCGGTAGTTTATTTGACTACAATAATCTAAATACGATTGGTAATAGTGCTTTA
TTAGCCTTCTTATTTTTTGTGGTGCATGGCATCGGACAAATTGCAGTTCAGCGCTTTAAATTACTTGAGGCGCTAACTTT
CCACCAATCCATCGAACTATATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAAGGTTATCTGGTTC
TAGATGAAAACTATGACATTGTTCTAAGTAATCCGGCTGCCTGCTCTCTGTTAGGCATTCCGCCACAATTTGCCAGTGAA
AAATATCCTTTAGCTAAATGGCACCCCGATTTATTTGAAATTCTTAAGTTTGGTAACTTACAAGAAGGTGACCGATTTAT
TTTTGAATCAAAGCTTTCTGCCTACTCTATTAATATTAAAGTGCAGCATCTTGTGGTGCCACAACAGGCATTGACGCTAC
TCATTTTACAAGATGCACAACACATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGACAACTTTCAGCCAGT
ATTGCACATGAAATCCGCAACCCTCTGGCAGCAATTGTTCAGGCAAATGAATTACTTAAAGATAGTGATTTTGAGCAGCA
AAATACTTTACGCCGTATGATTGGTAAGCAAACAAAACGTATTGATAGTATTGTTCAAGACACATTAGGACTTGCCAGTA
GCGAAAGAACTCACCCAATCCAGATTGAATTAAACGACTTCATAAAGACATTATTAGACGAAGATCTATCGGATGTTAAA
CATTCTATACAGCTTAAAATCTCTGATTCATCCTTAAAATTATTATTTGACGAGAAACAACTAAGACAAGTGCTGATTAA
CCTTGTCAGAAATGCTTTACGACATAATGCACCTGATTCACCCCATGTTTTGATCAACATTCATTCACAAACAAATAAAA
TCTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACGTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATGGCATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-256)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.487

100

0.935

Multiple sequence alignment