Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AC2117_RS02085 Genome accession   NZ_LS999521
Coordinates   444257..444886 (-) Length   209 a.a.
NCBI ID   WP_133971620.1    Uniprot ID   A0A446ZFL3
Organism   Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439257..449886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC2117_RS02050 (AC2117_00405) mlaE 439597..440376 (+) 780 WP_005038455.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  AC2117_RS02055 (AC2117_00406) - 440376..441047 (+) 672 WP_133971615.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AC2117_RS02060 (AC2117_00407) - 441074..441715 (+) 642 WP_197730968.1 phospholipid-binding protein MlaC -
  AC2117_RS02065 (AC2117_00408) - 441727..442014 (+) 288 WP_042895242.1 lipid asymmetry maintenance protein MlaB -
  AC2117_RS02070 (AC2117_00409) - 442087..443100 (-) 1014 WP_004639553.1 magnesium and cobalt transport protein CorA -
  AC2117_RS02075 (AC2117_00410) - 443258..443839 (+) 582 WP_133971617.1 TIGR00730 family Rossman fold protein -
  AC2117_RS02080 (AC2117_00411) - 443853..444251 (+) 399 WP_133971618.1 NUDIX hydrolase -
  AC2117_RS02085 (AC2117_00412) comF 444257..444886 (-) 630 WP_133971620.1 ComF family protein Machinery gene
  AC2117_RS02090 (AC2117_00413) recG 444879..446924 (-) 2046 WP_133971622.1 ATP-dependent DNA helicase RecG -
  AC2117_RS02095 (AC2117_00414) - 446945..447760 (+) 816 WP_133971624.1 NAD-dependent epimerase/dehydratase family protein -
  AC2117_RS02100 (AC2117_00415) - 447840..448823 (+) 984 WP_133971626.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24044.12 Da        Isoelectric Point: 9.6669

>NTDB_id=1143484 AC2117_RS02085 WP_133971620.1 444257..444886(-) (comF) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MFSFLNPQHLIHSLSPCLLCESGVREKHSLCKDCWGQLPWLKQTIQRNNQSVLVACDYAYPVNRIIQQFKYEQKLHYQIL
LGEILQQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKQLKTPIWQPVQRLAEHSQKGLSRLERLENIEQQFIAL
THEKRRYRRILIIDDVVTTGSSIYALSQAIKQLGCTSIHAACLAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1143484 AC2117_RS02085 WP_133971620.1 444257..444886(-) (comF) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
ATGTTTAGTTTCTTAAATCCGCAACATCTTATCCATTCACTATCACCTTGCTTGTTGTGTGAGTCAGGTGTGCGAGAAAA
ACATTCGCTCTGTAAGGACTGTTGGGGACAGTTACCTTGGCTTAAACAAACAATTCAGCGCAATAATCAATCAGTTCTTG
TAGCCTGTGATTATGCATATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTG
TTAGGTGAAATTCTACAGCAACTAAAATTTCCTAAAGTACAGGCTATTGTACCTATGCCAATTTCGAATCAACGCTTAAT
TGAACGTGGTTTCAATCAGTCTTTGTTACTCGCAAATATCTTAAGCAAGCAATTAAAAACACCTATTTGGCAGCCAGTAC
AACGCCTTGCCGAGCATTCGCAAAAAGGGCTTTCACGCTTAGAAAGACTTGAAAATATTGAACAGCAATTTATTGCACTC
ACTCATGAAAAACGGCGCTATCGCCGCATTCTCATTATTGATGATGTGGTCACAACCGGAAGCTCAATTTATGCCCTCAG
TCAGGCAATAAAACAACTCGGATGTACATCCATTCATGCAGCTTGTTTAGCAGCAACTTTAACGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A446ZFL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.732

100

0.837
  comF Acinetobacter baumannii D1279779

82.775

100

0.828

Multiple sequence alignment