Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AC2117_RS01705 Genome accession   NZ_LS999521
Coordinates   365502..366320 (+) Length   272 a.a.
NCBI ID   WP_197730966.1    Uniprot ID   A0A446ZFF5
Organism   Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360502..371320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC2117_RS01670 - 361081..361170 (-) 90 Protein_318 hypothetical protein -
  AC2117_RS01675 (AC2117_00331) rpoZ 361251..361529 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  AC2117_RS01680 (AC2117_00332) gmk 361602..362231 (-) 630 WP_042895429.1 guanylate kinase -
  AC2117_RS01685 (AC2117_00333) ispH 362354..363304 (+) 951 WP_042895425.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AC2117_RS01690 (AC2117_00334) fimU 363477..363950 (+) 474 WP_133971519.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AC2117_RS01695 (AC2117_00335) pilV 363944..364504 (+) 561 WP_133971521.1 type IV pilus modification protein PilV Machinery gene
  AC2117_RS01700 (AC2117_00336) pilW 364504..365505 (+) 1002 WP_133971523.1 PilW family protein Machinery gene
  AC2117_RS01705 (AC2117_00337) pilX 365502..366320 (+) 819 WP_197730966.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AC2117_RS01710 (AC2117_00338) pilY1 366332..370186 (+) 3855 WP_197730967.1 PilC/PilY family type IV pilus protein Machinery gene
  AC2117_RS01715 (AC2117_00339) pilY2 370197..370679 (+) 483 WP_133971525.1 type IV pilin protein Machinery gene
  AC2117_RS01720 (AC2117_00340) pilE 370676..371101 (+) 426 WP_133971527.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28806.56 Da        Isoelectric Point: 6.4762

>NTDB_id=1143480 AC2117_RS01705 WP_197730966.1 365502..366320(+) (pilX) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MTHLIHENIKSKSKEKGATLIVVLIILLVVVSVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTNDYGSNRQAVVTQVAVSI
PTDAASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQSDCLSTSSAKISDNFDTALTAKQTL
AECLANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1143480 AC2117_RS01705 WP_197730966.1 365502..366320(+) (pilX) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
ATGACCCATTTAATTCATGAAAATATTAAAAGTAAATCTAAGGAAAAAGGAGCAACCCTTATTGTTGTGCTGATTATTTT
ATTGGTTGTTGTTTCTGTAGGTGTTTTAGCAATAAGAGTGGCAATTGTTTCTTTAAAAGTTGCTACTAACAGCCAAGTTA
GCCAATTAAATTTTCAGTCATCTGATACGCCTTTAGAACTCATTGTACAGATGAATCCTACTACCCTAACTAATATTACA
AATGTGATTGGTGCTGCGCTCAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAACTTTTGTTATAAACCTGTTTCTAC
ATCAACAAATTTTGCTCAGACCCGAGGTGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCAGTCGTTGAAGATGGGG
GAGTGGCAGGTTTTTGTGATCTAACAAATGACTATGGTAGTAATCGTCAAGCGGTGGTTACTCAAGTTGCTGTGAGTATT
CCTACAGATGCTGCAAGTGATATTCCTGGCTCTAATTTACCACGAGGAACAAACACCTCCGAAGGCACACAACTACCTAA
AAGCATGCTATCTACGCAACGTATTCGTGTTATTACCACTGCTTTTTTGCCAGCCTACGCATCTACCTCTATCGAAACTT
TGCAAAGTGATTGCTTAAGTACGAGTTCAGCAAAAATTAGTGACAATTTTGATACCGCGTTAACGGCTAAACAAACACTA
GCGGAGTGTTTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTTACTCAAAT
TACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A446ZFF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.904

Multiple sequence alignment