Detailed information NTG1143437

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PPRCHA0_RS27005
• Genome accession: NZ_LS999205
• Coordinates: 5895421..5896755 (+)
• Length: 444 a.a.
• NCBI ID: WP_041752595.1
• Uniprot ID: A0A9Q7R678
• Organism: Pseudomonas protegens CHA0
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5890421..5901755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPRCHA0_RS26985 (PPRCHA0_5233)	pgeF	5891777..5892502 (-)	726	WP_015637079.1	peptidoglycan editing factor PgeF	-
PPRCHA0_RS26990 (PPRCHA0_5234)	rluD	5892499..5893461 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PPRCHA0_RS26995 (PPRCHA0_5235)	-	5893612..5894637 (+)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
PPRCHA0_RS27000 (PPRCHA0_5236)	-	5894762..5894995 (+)	234	WP_015637081.1	PP0621 family protein	-
PPRCHA0_RS27005 (PPRCHA0_5237)	pilR	5895421..5896755 (+)	1335	WP_041752595.1	sigma-54 dependent transcriptional regulator	Regulator
PPRCHA0_RS27010 (PPRCHA0_5238)	thiO	5896752..5897852 (-)	1101	WP_015637083.1	glycine oxidase ThiO	-
PPRCHA0_RS27015 (PPRCHA0_5239)	-	5897906..5898307 (-)	402	WP_015637084.1	type IV pilin protein	-
PPRCHA0_RS27020 (PPRCHA0_5240)	-	5898323..5901385 (-)	3063	WP_015637085.1	pilus assembly protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49275.50 Da
• Isoelectric Point: 8.6800

>NTDB_id=1143437 PPRCHA0_RS27005 WP_041752595.1 5895421..5896755(+) (pilR) [Pseudomonas protegens CHA0]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=1143437 PPRCHA0_RS27005 WP_041752595.1 5895421..5896755(+) (pilR) [Pseudomonas protegens CHA0]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCAGGCCACGGACTGCGCAACGGATGACCCAGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTAGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCTGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.205	99.775	0.631
pilR	Acinetobacter baumannii strain A118	45.534	100	0.471
luxO	Vibrio cholerae strain A1552	37.327	97.748	0.365