Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   D5R51_RS07965 Genome accession   NZ_LS997867
Coordinates   1730536..1732665 (-) Length   709 a.a.
NCBI ID   WP_220431791.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1725536..1737665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS07945 (SAMEA104470976_01588) kdsB 1726829..1727587 (-) 759 WP_071178442.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D5R51_RS07950 (SAMEA104470976_01589) - 1727587..1727766 (-) 180 WP_000350068.1 Trm112 family protein -
  D5R51_RS07955 (SAMEA104470976_01590) lpxK 1727747..1728754 (-) 1008 WP_162891970.1 tetraacyldisaccharide 4'-kinase -
  D5R51_RS07960 (SAMEA104470976_01591) msbA 1728757..1730505 (-) 1749 WP_000052151.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  D5R51_RS07965 (SAMEA104470976_01592) comEC 1730536..1732665 (-) 2130 WP_220431791.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D5R51_RS07970 (SAMEA104470976_01593) - 1732788..1733318 (+) 531 WP_119091290.1 DUF2062 domain-containing protein -
  D5R51_RS07975 (SAMEA104470976_01594) lolE 1733433..1734677 (-) 1245 WP_119091291.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  D5R51_RS07980 (SAMEA104470976_01595) lolD 1734678..1735364 (-) 687 WP_119091292.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  D5R51_RS07985 (SAMEA104470976_01596) lolC 1735357..1736565 (-) 1209 WP_162891971.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  D5R51_RS07990 (SAMEA104470976_01597) - 1736741..1737316 (+) 576 WP_000999602.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79773.00 Da        Isoelectric Point: 8.0138

>NTDB_id=1143343 D5R51_RS07965 WP_220431791.1 1730536..1732665(-) (comEC) [Vibrio paracholerae strain NCTC 30]
MGLLGYHRAGRKFLGFVVAILIIVLQGNLIRDQSNVLYQAGPDIIIKGRADSFFRQTRYAHEGFALIYEVNGQSLGTLFQ
PRVRLTTPILLQPNDLFEFSATVKPVIGRLNEIGFDAEAHYMAQSVIARVSVKANTPYTISPQEDVRSSLQQKLVTLTQN
SPFQGIILALTFGERNGIDEQEWRALRNSGLIHLVAISGLHIGIAFSVGYFLGLGMMRLHAKLLWSPFVCGALLAVFYAW
LAGFTLPTQRALIMCLLNVALVMLAFPLSALKRILLTLVAVLVWSPFTSLSNSFWMSFLAVAIVLYQLASQSQRQVWWKA
LLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWPGVAAVYWPWVDWTFLPLDWALQF
ADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLLLSMIGLWWWFPSITSLWRMDVLDVGHGLAIVIEQDERAIVYDT
GSSWPGGSYVQSVIEPMLQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPDWIRASQLGTEFMPCIRGESWQWQSLHFT
VLWPPQAVSRAYNPHSCVIRMTDTQSNHSVLLSGDVTAMGEWLLARDGAQLQSDVMIVPHHGSKTSSTAEFIAQVNPKLA
IASVAKDNRWNLPNPQVVARYQAQQIEWLDTGQAGQISLFFYPEQLDWFTQRSLGWQPWYRQMLRKGVE

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=1143343 D5R51_RS07965 WP_220431791.1 1730536..1732665(-) (comEC) [Vibrio paracholerae strain NCTC 30]
ATGGGTTTGCTCGGTTATCACCGGGCTGGCCGTAAATTCCTTGGCTTCGTAGTTGCCATACTAATCATTGTGCTACAAGG
CAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAGGGCCGGATATTATCATAAAAGGCCGTGCCGACAGCTTTT
TTAGGCAAACCCGTTATGCTCATGAAGGATTTGCCTTAATTTATGAGGTCAATGGCCAAAGCTTGGGCACATTGTTTCAG
CCTCGAGTACGCTTAACTACCCCTATTCTTTTGCAGCCGAATGATCTATTCGAATTTTCAGCGACAGTAAAGCCGGTTAT
TGGCCGGCTCAACGAAATCGGTTTTGATGCAGAAGCTCATTATATGGCTCAATCTGTCATCGCTAGGGTGAGCGTTAAGG
CCAATACACCATACACAATTTCACCTCAAGAAGACGTTAGGTCAAGCTTGCAGCAAAAGCTTGTTACATTGACGCAAAAT
AGCCCTTTCCAAGGGATTATTTTAGCCCTGACGTTTGGTGAGCGAAACGGTATTGATGAGCAAGAGTGGCGAGCCTTACG
CAATAGTGGCTTAATTCATTTAGTGGCGATTTCGGGGCTGCACATTGGTATCGCTTTTAGTGTGGGTTATTTTCTCGGGC
TCGGCATGATGCGCCTTCATGCTAAGTTACTTTGGTCTCCTTTCGTGTGTGGGGCTTTACTGGCGGTGTTCTACGCTTGG
CTTGCCGGATTTACGTTGCCCACTCAGCGTGCATTGATCATGTGCTTACTCAATGTAGCGTTGGTGATGCTCGCTTTTCC
TCTTTCTGCGCTCAAGCGGATTTTACTCACCTTGGTTGCGGTCTTGGTTTGGTCACCCTTCACCTCACTTTCAAACAGTT
TCTGGATGTCGTTTTTGGCGGTCGCGATTGTACTCTACCAATTAGCCAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCT
CTGCTTTGGGCGCAGGTGTTCCTTGTCTGTTTAATGGCGCCGGTTACGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGC
AGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGGTGATTGTCCCAGCTTTGTTTTTGGGCCTATTACTTATGG
TGGTATGGCCCGGTGTGGCTGCTGTTTACTGGCCTTGGGTGGATTGGACGTTTTTACCGCTCGATTGGGCTTTGCAGTTT
GCCGATGTAGGCTGGTGGGTGGTACCCAGCAAAGTACAAGGTGTGGTCGCAGCGAGTGTGGCCATCCTCTTGCTTTATCG
ATTTATGAGCCTAAAAGCCTGCAGCTTATTGTTGAGTATGATTGGCTTATGGTGGTGGTTTCCCTCTATCACTTCGCTTT
GGCGAATGGATGTGCTGGATGTTGGACATGGCTTGGCGATTGTGATTGAGCAAGATGAGCGAGCGATAGTCTACGACACA
GGCAGTAGTTGGCCGGGAGGCAGCTATGTGCAAAGTGTGATTGAGCCTATGCTACAGCAGCGAGGGCTACGCCAAGTCGA
TGGAGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTGATTGGCAAGGTTTAGCTGAGCGCTGGCAACCCGATTGGA
TTCGCGCTAGCCAACTCGGGACAGAGTTTATGCCTTGTATCCGAGGTGAAAGTTGGCAGTGGCAATCTCTCCATTTTACG
GTGTTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCCGCATTCGTGTGTGATTCGTATGACTGATACTCAATCTAA
CCATTCTGTACTGCTCTCCGGGGATGTCACGGCTATGGGGGAGTGGCTGCTTGCTCGCGACGGAGCGCAGCTGCAAAGTG
ACGTGATGATTGTACCGCACCACGGCAGTAAAACGTCGTCCACTGCAGAGTTTATTGCCCAAGTGAATCCCAAACTTGCG
ATTGCTTCTGTGGCGAAAGATAACCGCTGGAACTTGCCTAATCCGCAAGTCGTAGCACGTTATCAAGCTCAGCAAATTGA
GTGGCTAGATACTGGACAAGCTGGGCAAATTAGCCTCTTTTTCTATCCAGAGCAGTTGGATTGGTTTACCCAACGCAGCC
TTGGCTGGCAGCCTTGGTATAGGCAGATGCTGCGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(461-641)

Competence protein (Competence)

(170-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

89.986

100

0.9
  comEC Vibrio parahaemolyticus RIMD 2210633

40.73

100

0.409
  comEC Vibrio campbellii strain DS40M4

40.762

100

0.408

Multiple sequence alignment