Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   D5R51_RS01070 Genome accession   NZ_LS997867
Coordinates   228777..229409 (-) Length   210 a.a.
NCBI ID   WP_119090753.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 223777..234409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS01050 (SAMEA104470976_00212) - 223927..225138 (+) 1212 WP_000215483.1 aspartate aminotransferase family protein -
  D5R51_RS01055 (SAMEA104470976_00213) astA 225278..226297 (+) 1020 WP_113592720.1 arginine N-succinyltransferase -
  D5R51_RS01060 (SAMEA104470976_00214) astD 226307..227764 (+) 1458 WP_113592721.1 succinylglutamate-semialdehyde dehydrogenase -
  D5R51_RS01065 (SAMEA104470976_00215) - 227907..228698 (+) 792 WP_000189091.1 DUF1338 domain-containing protein -
  D5R51_RS01070 (SAMEA104470976_00216) crp 228777..229409 (-) 633 WP_119090753.1 cAMP-activated global transcriptional regulator CRP Regulator
  D5R51_RS01075 (SAMEA104470976_00217) - 229652..230521 (-) 870 WP_001274666.1 phosphoribulokinase -
  D5R51_RS01080 (SAMEA104470976_00218) - 230618..230827 (-) 210 WP_000586561.1 YheU family protein -
  D5R51_RS01085 (SAMEA104470976_00219) - 230956..231945 (-) 990 WP_119090754.1 hydrolase -
  D5R51_RS01090 (SAMEA104470976_00220) - 231942..232427 (-) 486 WP_001278733.1 TIGR02444 family protein -
  D5R51_RS01095 (SAMEA104470976_00221) - 232428..234344 (-) 1917 WP_119090755.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23562.45 Da        Isoelectric Point: 9.3833

>NTDB_id=1143332 D5R51_RS01070 WP_119090753.1 228777..229409(-) (crp) [Vibrio paracholerae strain NCTC 30]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEKGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAGISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1143332 D5R51_RS01070 WP_119090753.1 228777..229409(-) (crp) [Vibrio paracholerae strain NCTC 30]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAAAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGGAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGATGGCATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment