Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | D5R51_RS00975 | Genome accession | NZ_LS997867 |
| Coordinates | 207095..207679 (+) | Length | 194 a.a. |
| NCBI ID | WP_162891871.1 | Uniprot ID | - |
| Organism | Vibrio paracholerae strain NCTC 30 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 202095..212679
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5R51_RS00960 (SAMEA104470976_00194) | oxyR | 202448..203341 (+) | 894 | WP_119090746.1 | DNA-binding transcriptional regulator OxyR | - |
| D5R51_RS00965 (SAMEA104470976_00195) | - | 203469..205946 (-) | 2478 | WP_029627686.1 | penicillin-binding protein 1A | - |
| D5R51_RS00970 (SAMEA104470976_00196) | pilM | 206089..207105 (+) | 1017 | WP_119090747.1 | type IV pilus assembly protein PilM | Machinery gene |
| D5R51_RS00975 (SAMEA104470976_00197) | pilN | 207095..207679 (+) | 585 | WP_162891871.1 | PilN domain-containing protein | Machinery gene |
| D5R51_RS00980 (SAMEA104470976_00198) | pilO | 207672..208262 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| D5R51_RS00985 (SAMEA104470976_00199) | pilP | 208252..208770 (+) | 519 | WP_119090749.1 | pilus assembly protein PilP | Machinery gene |
| D5R51_RS00990 (SAMEA104470976_00200) | pilQ | 208796..210517 (+) | 1722 | WP_162891872.1 | type IV pilus secretin PilQ | Machinery gene |
| D5R51_RS00995 (SAMEA104470976_00201) | aroK | 210704..211228 (+) | 525 | WP_000818615.1 | shikimate kinase AroK | - |
| D5R51_RS01000 (SAMEA104470976_00202) | aroB | 211256..212341 (+) | 1086 | WP_162891873.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 22091.56 Da Isoelectric Point: 9.9065
>NTDB_id=1143328 D5R51_RS00975 WP_162891871.1 207095..207679(+) (pilN) [Vibrio paracholerae strain NCTC 30]
MLHKVNLLPWRDARREAHKKRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFALDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTEVEMHEIV
SGNKRFGKQFQSFKVSFKVLNPTSNSQHGEAHNG
MLHKVNLLPWRDARREAHKKRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFALDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTEVEMHEIV
SGNKRFGKQFQSFKVSFKVLNPTSNSQHGEAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=1143328 D5R51_RS00975 WP_162891871.1 207095..207679(+) (pilN) [Vibrio paracholerae strain NCTC 30]
ATGTTGCATAAGGTTAACTTACTGCCGTGGCGTGATGCGCGGCGTGAAGCACATAAAAAGCGTTTTTTAGGGCTAGTGAC
ACTCGGTGTTTTGCTGGCAGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GCATTGGTTATTTGCAACAACATATCTTCGCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCAGAAGAAGAACATAAG
GCGTTATTGACCCGCTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAGTTTATGAACCAAATGCC
AAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAAATAGAAATAACCGGGATCAGCGATT
CCACTGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGAAGTTGAAATGCATGAAATCGTT
TCAGGAAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTTAAAGTTTTAAACCCAACCTCTAACTCACA
ACATGGGGAGGCACATAATGGCTAG
ATGTTGCATAAGGTTAACTTACTGCCGTGGCGTGATGCGCGGCGTGAAGCACATAAAAAGCGTTTTTTAGGGCTAGTGAC
ACTCGGTGTTTTGCTGGCAGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GCATTGGTTATTTGCAACAACATATCTTCGCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCAGAAGAAGAACATAAG
GCGTTATTGACCCGCTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAGTTTATGAACCAAATGCC
AAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAAATAGAAATAACCGGGATCAGCGATT
CCACTGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGAAGTTGAAATGCATGAAATCGTT
TCAGGAAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTTAAAGTTTTAAACCCAACCTCTAACTCACA
ACATGGGGAGGCACATAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
94.845 |
100 |
0.948 |
| pilN | Vibrio campbellii strain DS40M4 |
56.545 |
98.454 |
0.557 |