Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQL00_RS06590 Genome accession   NZ_LS483523
Coordinates   1218810..1220768 (+) Length   652 a.a.
NCBI ID   WP_000748893.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836169     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1213810..1225768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL00_RS06560 - 1213946..1214458 (+) 513 WP_000892261.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  DQL00_RS11945 - 1214442..1215091 (+) 650 Protein_1187 DUF1803 domain-containing protein -
  DQL00_RS06575 - 1215192..1215386 (+) 195 WP_000051201.1 CsbD family protein -
  DQL00_RS06580 - 1215432..1216877 (-) 1446 WP_000590305.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  DQL00_RS06585 - 1216983..1218605 (+) 1623 WP_000017802.1 putative polysaccharide biosynthesis protein -
  DQL00_RS06590 amiA 1218810..1220768 (+) 1959 WP_000748893.1 peptide ABC transporter substrate-binding protein Regulator
  DQL00_RS11950 - 1220979..1221713 (+) 735 Protein_1192 ABC transporter ATP-binding protein -
  DQL00_RS11955 - 1221900..1222622 (+) 723 WP_025172766.1 ABC transporter ATP-binding protein -
  DQL00_RS06600 - 1222780..1223874 (+) 1095 WP_000031974.1 cystathionine gamma-synthase -
  DQL00_RS06605 - 1223882..1225048 (+) 1167 WP_000521381.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72731.08 Da        Isoelectric Point: 5.0588

>NTDB_id=1142974 DQL00_RS06590 WP_000748893.1 1218810..1220768(+) (amiA) [Streptococcus pneumoniae strain 4041STDY6836169]
MKKSKSKYLTLAGLVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGI
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQESLERNFTAGAYTTARLFPNSSSYEGIKEKYKNNIIYSMQNSTSYFFNFNLDRKSYNYTSKTS
DIEKKSTQEAVLNKNFRQAINFAFDRTSYGAQSEGKEGATKILRNLVVPPNFVSIKGKDFGEVVASKMVNYGKEWQGINF
ADGQDPYYNPEKAKAKFAEAKKELEAKGVQFPIHLDKTVEVTDKVGIQGVSSIKQSIESVLGSDNVVIDIQQLTSDEFDS
SGYFAQTAAQKDYDLYHGGWGPDYQDPSTYLDIFNTNSGGVLQNLGLEPGEANDKAKAVGLDVYTKMLEEANKEQDPAKR
YEKYADIQAWLIDSSLVLPSVSRGGTPSLRRTVPFAAAYGLTGTKGVESYKYLKVQDKIVTTDEYAKAREKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1142974 DQL00_RS06590 WP_000748893.1 1218810..1220768(+) (amiA) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGAAAAAGTCTAAGAGCAAATATCTAACCTTGGCAGGTCTTGTCCTGGGTACAGGAGTTTTATTGAGCGCGTGTGGAAA
TTCTAGCACTGCATCAAAAACCTATAACTATGTTTATTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGCG
CAACAACCAATGATATTGTGACCAATCTGGTAGATGGTCTCATGGAAAATGACCAATATGGGAACTATGTGCCATCCTTG
GCAGAAGATTGGACTGTTTCTCAGGATGGTTTGACCTATACCTACAAACTTCGTAAGGATGCCAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCACCTGTAACTGCCCAGGATTTTGTGACAGGATTGCAATATGCAGCTGATAAAAAATCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTTGCAGGTTTGGATGACTATATCACTGGTAAAACAAGCGACTTTTCAACTGTCGGTATC
AAGGCTCTTGATGATCAAACCGTTCAATACACCTTGGCTCGACCAGAACCTTACTGGAACTCAAAAACAACCTCAACCAT
TCTTTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGCAAGGTAGACCCTGCTAATATTTTGTACA
GTGGACCTTTCTTGATGAAAGCTTTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGACGATGTGAAATTGACCTACTATGATGGTAGCGACCAAGAATCACTGGAACGTAATTTTACAGCTGG
TGCTTATACTACGGCTCGTCTTTTTCCTAACAGCTCCAGCTATGAAGGGATTAAAGAAAAATACAAAAACAATATCATCT
ATAGTATGCAAAATTCAACTTCATATTTCTTTAATTTTAACCTAGATAGGAAGTCTTACAATTATACTTCTAAAACAAGT
GACATTGAAAAGAAATCGACTCAGGAAGCAGTTCTCAATAAAAATTTCCGTCAGGCTATCAATTTTGCTTTTGACAGAAC
ATCTTATGGGGCTCAGTCTGAAGGGAAAGAAGGTGCAACAAAGATTTTGCGTAACCTAGTGGTTCCTCCAAACTTTGTCA
GTATCAAGGGAAAAGACTTTGGTGAAGTTGTAGCCTCTAAGATGGTCAACTATGGTAAGGAATGGCAAGGTATCAACTTT
GCGGATGGTCAAGACCCTTACTACAATCCTGAGAAAGCCAAGGCTAAGTTTGCGGAAGCTAAGAAAGAACTCGAAGCAAA
GGGTGTTCAATTCCCAATCCACTTGGATAAGACTGTGGAAGTAACAGATAAAGTAGGCATACAAGGAGTTAGTTCTATCA
AACAATCAATTGAATCTGTTTTAGGTTCTGATAATGTAGTGATTGACATTCAGCAATTAACATCAGATGAGTTTGACAGT
TCAGGCTACTTTGCTCAAACAGCTGCTCAGAAAGACTATGATTTATATCATGGCGGTTGGGGACCTGATTATCAAGACCC
GTCAACCTATCTCGATATTTTTAATACTAATAGTGGAGGAGTTCTACAAAATCTTGGACTAGAGCCTGGAGAAGCCAATG
ACAAGGCTAAGGCAGTTGGACTGGATGTCTATACTAAAATGTTGGAAGAAGCTAATAAAGAGCAAGATCCAGCCAAACGT
TATGAGAAATATGCTGATATTCAAGCTTGGTTGATTGATAGTTCTTTAGTTCTTCCAAGTGTTTCGCGTGGGGGAACACC
ATCATTGAGAAGAACCGTACCATTTGCTGCTGCCTATGGTTTAACCGGTACAAAAGGGGTTGAATCATATAAATACCTCA
AAGTACAAGATAAGATTGTCACAACAGACGAATATGCAAAAGCCAGAGAAAAATGGTTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.422

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

56.031

100

0.563
  amiA3 Streptococcus thermophilus LMG 18311

55.878

100

0.561

Multiple sequence alignment