Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   DQL00_RS02660 Genome accession   NZ_LS483523
Coordinates   500709..501467 (-) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836169     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 495709..506467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL00_RS02635 pth 495742..496311 (-) 570 WP_000163933.1 aminoacyl-tRNA hydrolase -
  DQL00_RS02640 ychF 496382..497497 (-) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  DQL00_RS02645 - 497581..497775 (-) 195 WP_000285194.1 DUF951 domain-containing protein -
  DQL00_RS02650 dnaN 497840..498976 (-) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  DQL00_RS02655 dnaA 499135..500496 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  DQL00_RS02660 spo0J 500709..501467 (-) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  DQL00_RS02665 htrA 501525..502706 (-) 1182 WP_000681601.1 S1C family serine protease Regulator
  DQL00_RS02670 rlmH 502889..503368 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQL00_RS02680 comC/comC1 503650..503775 (+) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  DQL00_RS02685 comD/comD1 503796..505121 (+) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  DQL00_RS02690 comE 505118..505870 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=1142927 DQL00_RS02660 WP_000410383.1 500709..501467(-) (spo0J) [Streptococcus pneumoniae strain 4041STDY6836169]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1142927 DQL00_RS02660 WP_000410383.1 500709..501467(-) (spo0J) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGTTTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment