Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SSAL8618_RS00340 Genome accession   NZ_CP009913
Coordinates   58714..59304 (+) Length   196 a.a.
NCBI ID   WP_002886323.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC 8618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 53714..64304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL8618_RS00315 (SSAL8618_00315) - 54839..55294 (-) 456 WP_002886315.1 DUF3021 domain-containing protein -
  SSAL8618_RS00320 (SSAL8618_00320) - 55291..55728 (-) 438 WP_038675015.1 LytTR family DNA-binding domain-containing protein -
  SSAL8618_RS00325 (SSAL8618_00325) - 55907..56209 (+) 303 WP_038675017.1 hypothetical protein -
  SSAL8618_RS00330 (SSAL8618_00330) hexB 56262..58205 (+) 1944 WP_038675019.1 DNA mismatch repair endonuclease MutL Machinery gene
  SSAL8618_RS00335 (SSAL8618_00335) - 58336..58557 (+) 222 WP_038675022.1 hypothetical protein -
  SSAL8618_RS00340 (SSAL8618_00340) ruvA 58714..59304 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA Machinery gene
  SSAL8618_RS00345 (SSAL8618_00345) - 59313..59867 (+) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  SSAL8618_RS00350 (SSAL8618_00350) cinA 59964..61232 (+) 1269 WP_014633777.1 competence/damage-inducible protein A Machinery gene
  SSAL8618_RS00355 (SSAL8618_00355) recA 61268..62407 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  SSAL8618_RS00360 (SSAL8618_00360) spx 62575..62973 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21728.12 Da        Isoelectric Point: 5.6710

>NTDB_id=114292 SSAL8618_RS00340 WP_002886323.1 58714..59304(+) (ruvA) [Streptococcus salivarius strain NCTC 8618]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALI
ALGYKATELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=114292 SSAL8618_RS00340 WP_002886323.1 58714..59304(+) (ruvA) [Streptococcus salivarius strain NCTC 8618]
ATGTATGATTATATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTGGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCCCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCTGTTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAGCAAATGGTTTTGGACTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGACACCAAGTCAACCTGAAGGGAATCATCAATTGGATGAGGCTATGGAAGCCTTGATT
GCTCTTGGTTATAAAGCCACAGAACTTAAGAAAATCAAGGCCTTCTTCGAAGGAACTAATGAAACGGCAGAGCAATACAT
TAAATCGGCTCTTAAAATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423