Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HPOKI898_RS01875 Genome accession   NZ_CP006827
Coordinates   389080..389880 (+) Length   266 a.a.
NCBI ID   WP_025275690.1    Uniprot ID   -
Organism   Helicobacter pylori oki898     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 384080..394880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI898_RS01840 (HPOKI898_01950) pseH 384580..385122 (+) 543 WP_025275685.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HPOKI898_RS01845 (HPOKI898_01955) - 385055..385993 (-) 939 WP_025275686.1 tetraacyldisaccharide 4'-kinase -
  HPOKI898_RS01850 (HPOKI898_01960) - 385990..386772 (-) 783 WP_025276715.1 NAD+ synthase -
  HPOKI898_RS01860 ilvC 387021..388013 (+) 993 WP_025275688.1 ketol-acid reductoisomerase -
  HPOKI898_RS01865 (HPOKI898_01975) minD 388037..388843 (+) 807 WP_025276716.1 septum site-determining protein MinD -
  HPOKI898_RS01870 (HPOKI898_01980) minE 388840..389073 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HPOKI898_RS01875 (HPOKI898_01985) dprA 389080..389880 (+) 801 WP_025275690.1 DNA-processing protein DprA Machinery gene
  HPOKI898_RS01880 (HPOKI898_01990) dprB 389877..390281 (+) 405 WP_025275691.1 Holliday junction resolvase RuvX Machinery gene
  HPOKI898_RS01885 (HPOKI898_02000) - 390413..391303 (+) 891 WP_025276717.1 cysteine-rich Sel1 repeat protein -
  HPOKI898_RS01890 (HPOKI898_02005) - 391488..391826 (+) 339 WP_025275693.1 hypothetical protein -
  HPOKI898_RS01895 (HPOKI898_02010) - 391810..392370 (+) 561 WP_025275694.1 hypothetical protein -
  HPOKI898_RS01900 (HPOKI898_02015) - 392472..393353 (-) 882 WP_025275695.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29912.86 Da        Isoelectric Point: 8.5818

>NTDB_id=114279 HPOKI898_RS01875 WP_025275690.1 389080..389880(+) (dprA) [Helicobacter pylori oki898]
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDIKLLRAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMEDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=114279 HPOKI898_RS01875 WP_025275690.1 389080..389880(+) (dprA) [Helicobacter pylori oki898]
ATGAAAAGTAATTTCCAATACAGCACGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATATAAAGCTTTTGAGAGCACCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTGGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACAAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCTCAAAAATACCAAAAGCCATTATTTGTTTTACCCCAGCGCTTGAATGAAAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGGAAGATGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.744

100

0.977
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment