Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPOKI898_RS01880 Genome accession   NZ_CP006827
Coordinates   389877..390281 (+) Length   134 a.a.
NCBI ID   WP_025275691.1    Uniprot ID   -
Organism   Helicobacter pylori oki898     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 384877..395281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI898_RS01845 (HPOKI898_01955) - 385055..385993 (-) 939 WP_025275686.1 tetraacyldisaccharide 4'-kinase -
  HPOKI898_RS01850 (HPOKI898_01960) - 385990..386772 (-) 783 WP_025276715.1 NAD+ synthase -
  HPOKI898_RS01860 ilvC 387021..388013 (+) 993 WP_025275688.1 ketol-acid reductoisomerase -
  HPOKI898_RS01865 (HPOKI898_01975) minD 388037..388843 (+) 807 WP_025276716.1 septum site-determining protein MinD -
  HPOKI898_RS01870 (HPOKI898_01980) minE 388840..389073 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HPOKI898_RS01875 (HPOKI898_01985) dprA 389080..389880 (+) 801 WP_025275690.1 DNA-processing protein DprA Machinery gene
  HPOKI898_RS01880 (HPOKI898_01990) dprB 389877..390281 (+) 405 WP_025275691.1 Holliday junction resolvase RuvX Machinery gene
  HPOKI898_RS01885 (HPOKI898_02000) - 390413..391303 (+) 891 WP_025276717.1 cysteine-rich Sel1 repeat protein -
  HPOKI898_RS01890 (HPOKI898_02005) - 391488..391826 (+) 339 WP_025275693.1 hypothetical protein -
  HPOKI898_RS01895 (HPOKI898_02010) - 391810..392370 (+) 561 WP_025275694.1 hypothetical protein -
  HPOKI898_RS01900 (HPOKI898_02015) - 392472..393353 (-) 882 WP_025275695.1 RluA family pseudouridine synthase -
  HPOKI898_RS01905 (HPOKI898_02020) recJ 393353..394903 (-) 1551 WP_025276718.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15204.62 Da        Isoelectric Point: 8.7220

>NTDB_id=114280 HPOKI898_RS01880 WP_025275691.1 389877..390281(+) (dprB) [Helicobacter pylori oki898]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSVEAYDNLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=114280 HPOKI898_RS01880 WP_025275691.1 389877..390281(+) (dprB) [Helicobacter pylori oki898]
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCACTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCCCGCATTGAGCATTTTATCAAACTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCGTAGAAGCTTATGACAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948

Multiple sequence alignment