Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   XFHB_RS12655 Genome accession   NZ_CP009885
Coordinates   2557528..2559141 (-) Length   537 a.a.
NCBI ID   WP_088578456.1    Uniprot ID   -
Organism   Xylella fastidiosa strain Hib4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2552528..2564141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFHB_RS12635 (XFHB_11890) pilA/pilAI 2552850..2553284 (+) 435 WP_088578452.1 pilin Machinery gene
  XFHB_RS12640 (XFHB_11895) - 2553721..2553951 (-) 231 WP_157293270.1 hypothetical protein -
  XFHB_RS12645 (XFHB_11900) pilB 2554103..2555836 (+) 1734 WP_088578454.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XFHB_RS12650 (XFHB_11905) - 2555930..2557342 (-) 1413 WP_088578455.1 sigma-54 dependent transcriptional regulator -
  XFHB_RS12655 (XFHB_11910) pilS 2557528..2559141 (-) 1614 WP_088578456.1 ATP-binding protein Regulator
  XFHB_RS12660 (XFHB_11915) sucC 2559396..2560559 (+) 1164 WP_004090371.1 ADP-forming succinate--CoA ligase subunit beta -
  XFHB_RS12665 (XFHB_11920) sucD 2560588..2561460 (+) 873 WP_046418458.1 succinate--CoA ligase subunit alpha -
  XFHB_RS15040 - 2561727..2562338 (+) 612 WP_228762741.1 hypothetical protein -

Sequence

Protein


Download         Length: 537 a.a.        Molecular weight: 59294.75 Da        Isoelectric Point: 6.3498

>NTDB_id=114280 XFHB_RS12655 WP_088578456.1 2557528..2559141(-) (pilS) [Xylella fastidiosa strain Hib4]
MLFSASLIHRIDFAPQRELYFLALYRILEAGLIAALVFSPVSILVDPEGDPYLGMVVSVGYLLLATILLVWGRNERWFTP
LVFGSTVADILAATLAIHALPKASAGIAMMLLFNVAAAAILLRLRFSMILAWIAGVAMLVEYIWTVLSEGDSSRSLAELV
MFFTSYTAVAYMCHQAAQRARYSQALAEKRRAQIINLAEINELIIRRMRTGVLVVDAANRIGLSNETTAALLGYDRQLVE
SDYDLATVAPELTMRLKCWRIGRHYEDTPLRLAPDQPEVQPRFVSLLADSGLTLIFLDDVSVVSRRAESLTLLALGRFSA
SLAHEIRNPLAAIKHASQLLEESSKLDKADQRLLEIILKQCQRTNGIVESVLGLARRERANPENLDLVGFVSRFVDEYRQ
TLSSEYGDNLEIQTLHSTVQALVDPRHLYQILAVLTHNALRYGRFPDTPAQVRIEVVYTGGSVGINVLDQGPGIPDAAVL
QLFQPFFTTSDHGTGLGLYIARELCNANQSNLEYVAIPGGGACFRITLPGPYALIPK

Nucleotide


Download         Length: 1614 bp        

>NTDB_id=114280 XFHB_RS12655 WP_088578456.1 2557528..2559141(-) (pilS) [Xylella fastidiosa strain Hib4]
GTGTTGTTCAGCGCTTCGCTGATTCATCGGATCGACTTTGCCCCGCAGCGTGAACTTTATTTTCTCGCCTTGTATCGGAT
ATTGGAGGCTGGATTGATCGCGGCCTTGGTGTTCAGTCCGGTGTCGATATTGGTGGATCCTGAGGGTGATCCATATTTGG
GCATGGTTGTCTCGGTCGGTTATTTGCTGTTGGCTACTATTTTGTTGGTCTGGGGTCGTAATGAGCGCTGGTTCACTCCA
TTAGTCTTTGGAAGTACTGTCGCCGACATTTTGGCTGCCACTCTTGCTATTCACGCCCTGCCTAAAGCCAGTGCTGGCAT
CGCGATGATGTTGTTGTTTAACGTTGCTGCCGCCGCCATTTTATTGCGGTTGCGTTTCAGCATGATCCTGGCTTGGATTG
CTGGGGTTGCGATGCTTGTGGAATACATCTGGACGGTACTCAGTGAGGGTGACTCCTCACGTTCACTGGCCGAGCTCGTT
ATGTTTTTCACCAGCTACACTGCAGTGGCGTATATGTGTCATCAGGCCGCGCAGCGGGCCAGATATAGCCAAGCTTTGGC
TGAAAAGCGCCGTGCCCAGATAATCAATTTGGCAGAGATCAACGAACTGATTATCCGACGTATGCGGACGGGTGTGTTGG
TGGTGGATGCTGCTAATCGAATCGGTTTGAGTAACGAAACTACAGCTGCGTTGCTGGGATACGACAGACAATTGGTCGAG
AGTGATTACGATCTCGCTACGGTTGCTCCGGAGTTGACAATGCGTCTGAAGTGTTGGCGTATCGGTCGACACTACGAAGA
TACTCCGTTGCGATTAGCGCCTGATCAACCTGAGGTCCAGCCTCGCTTTGTAAGTCTGCTTGCCGACAGTGGATTGACAT
TAATTTTCCTTGATGATGTCAGTGTTGTTTCACGCCGTGCCGAATCGTTGACTTTGTTGGCGCTTGGACGTTTTTCAGCC
AGTTTGGCACACGAGATTCGTAATCCTTTGGCTGCAATCAAACATGCATCGCAGCTCTTGGAAGAGTCCTCCAAACTTGA
CAAAGCCGATCAACGGCTGTTGGAGATTATTCTAAAGCAGTGCCAGCGGACCAATGGGATTGTGGAGAGCGTGCTTGGCT
TGGCAAGACGCGAACGTGCTAACCCGGAAAATTTGGATTTGGTCGGTTTCGTGTCCCGATTTGTCGATGAATACCGCCAG
ACATTGTCAAGCGAGTATGGGGACAATCTGGAAATACAAACGTTGCACAGTACCGTGCAGGCACTGGTGGATCCACGCCA
CTTGTACCAGATCCTCGCTGTCCTTACCCACAACGCGTTGCGTTATGGCCGCTTTCCGGATACTCCAGCACAGGTGCGTA
TTGAGGTGGTATATACCGGAGGCAGCGTGGGGATCAATGTCCTTGATCAGGGGCCTGGTATACCCGATGCGGCTGTTTTG
CAGCTTTTTCAGCCTTTTTTCACTACTTCCGACCATGGTACGGGGCTTGGTCTATACATCGCTCGTGAGCTGTGCAACGC
GAATCAATCCAATCTTGAGTACGTGGCCATTCCAGGGGGCGGGGCTTGTTTCCGGATTACTTTGCCGGGTCCGTATGCAT
TGATTCCGAAGTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(424-529)

His Kinase A (phospho-acceptor) domain (HisKA)

(314-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

37.951

98.138

0.372

Multiple sequence alignment