Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DQL17_RS09140 Genome accession   NZ_LS483496
Coordinates   1848560..1848907 (-) Length   115 a.a.
NCBI ID   WP_172452366.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8455     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1843560..1853907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL17_RS09120 (NCTC8455_01820) bioB 1843949..1844950 (-) 1002 WP_014550962.1 biotin synthase BioB -
  DQL17_RS09125 (NCTC8455_01821) thiQ 1845063..1845710 (-) 648 WP_111689183.1 thiamine ABC transporter ATP-binding protein -
  DQL17_RS09130 (NCTC8455_01822) thiP 1845694..1847310 (-) 1617 WP_111689184.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DQL17_RS09135 (NCTC8455_01823) thiB 1847315..1848313 (-) 999 WP_050948643.1 thiamine ABC transporter substrate binding subunit -
  DQL17_RS09140 (NCTC8455_01825) comE1/comEA 1848560..1848907 (-) 348 WP_172452366.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQL17_RS09145 (NCTC8455_01826) ispH 1849076..1850020 (-) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DQL17_RS09150 (NCTC8455_01827) lspA 1850017..1850532 (-) 516 WP_050948645.1 signal peptidase II -
  DQL17_RS09155 (NCTC8455_01828) - 1850602..1852161 (-) 1560 WP_032821875.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12446.35 Da        Isoelectric Point: 9.0428

>NTDB_id=1142736 DQL17_RS09140 WP_172452366.1 1848560..1848907(-) (comE1/comEA) [Haemophilus influenzae strain NCTC8455]
MKLMKTLFTSVVLCGSLAAGSTFSENKVVEQTTQAVVTTQTDSQVAPAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1142736 DQL17_RS09140 WP_172452366.1 1848560..1848907(-) (comE1/comEA) [Haemophilus influenzae strain NCTC8455]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTTCTGAAAACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCACCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

81.25

97.391

0.791
  comEA/comE1 Glaesserella parasuis strain SC1401

56.522

100

0.565
  comEA Vibrio campbellii strain DS40M4

37.5

97.391

0.365

Multiple sequence alignment