Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   DQL17_RS02955 Genome accession   NZ_LS483496
Coordinates   585441..585854 (-) Length   137 a.a.
NCBI ID   WP_050948868.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8455     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 580441..590854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL17_RS02925 (NCTC8455_00578) - 580514..581104 (-) 591 WP_021034387.1 YjaG family protein -
  DQL17_RS02930 (NCTC8455_00579) nudC 581140..581934 (-) 795 WP_021034386.1 NAD(+) diphosphatase -
  DQL17_RS02935 (NCTC8455_00580) nfuA 582002..582598 (-) 597 WP_021034385.1 Fe-S biogenesis protein NfuA -
  DQL17_RS02940 (NCTC8455_00581) - 582674..583360 (-) 687 WP_050948865.1 ComF family protein -
  DQL17_RS02945 (NCTC8455_00582) tnpA 583636..584091 (-) 456 WP_050948866.1 IS200/IS605 family transposase -
  DQL17_RS02950 (NCTC8455_00583) comE 584088..585431 (-) 1344 WP_050948867.1 type IV pilus secretin PilQ Machinery gene
  DQL17_RS02955 (NCTC8455_00584) comD 585441..585854 (-) 414 WP_050948868.1 pilus assembly protein PilP Machinery gene
  DQL17_RS02960 (NCTC8455_00585) comC 585851..586372 (-) 522 WP_050948869.1 competence protein ComC Machinery gene
  DQL17_RS02965 (NCTC8455_00586) comB 586369..586878 (-) 510 WP_050948870.1 hypothetical protein Machinery gene
  DQL17_RS02970 (NCTC8455_00587) comA 586879..587676 (-) 798 WP_050948871.1 pilus assembly protein PilM Machinery gene
  DQL17_RS02975 (NCTC8455_00588) - 587775..590375 (+) 2601 WP_050948872.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15644.74 Da        Isoelectric Point: 4.3509

>NTDB_id=1142719 DQL17_RS02955 WP_050948868.1 585441..585854(-) (comD) [Haemophilus influenzae strain NCTC8455]
MKYWFFLTVLLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSILEGVDVAQEGYIVEKIDQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1142719 DQL17_RS02955 WP_050948868.1 585441..585854(-) (comD) [Haemophilus influenzae strain NCTC8455]
ATGAAGTATTGGTTTTTCCTAACTGTATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTCGATAAAACACAACG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCCTTGAATGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCATTATTGCAAGATCAAGGTTTGCAAGTTTACAGCATTTTAGAGGGTGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCGACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae Rd KW20

94.891

100

0.949
  comD Haemophilus influenzae 86-028NP

94.161

100

0.942

Multiple sequence alignment