Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   DQL57_RS03135 Genome accession   NZ_LS483491
Coordinates   690767..691330 (-) Length   187 a.a.
NCBI ID   WP_059106497.1    Uniprot ID   A0AAP8PQ38
Organism   Staphylococcus auricularis strain NCTC12101     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 685767..696330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL57_RS03110 (NCTC12101_00654) - 686017..687375 (+) 1359 WP_059106494.1 TrkH family potassium uptake protein -
  DQL57_RS03115 (NCTC12101_00655) - 687535..689043 (+) 1509 WP_059106495.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  DQL57_RS03120 (NCTC12101_00656) - 689120..690028 (-) 909 WP_059106496.1 DUF2268 domain-containing putative Zn-dependent protease -
  DQL57_RS03135 (NCTC12101_00659) comK/comK1 690767..691330 (-) 564 WP_059106497.1 competence protein ComK Regulator
  DQL57_RS03140 (NCTC12101_00660) - 691581..691799 (+) 219 WP_059106498.1 IDEAL domain-containing protein -
  DQL57_RS03145 (NCTC12101_00662) - 691897..692884 (-) 988 Protein_626 lipoate--protein ligase -
  DQL57_RS03150 (NCTC12101_00663) - 693084..693269 (+) 186 WP_059106500.1 DUF2187 family protein -
  DQL57_RS03155 (NCTC12101_00664) - 693274..693876 (+) 603 WP_059106501.1 CPBP family glutamic-type intramembrane protease -
  DQL57_RS03160 (NCTC12101_00665) - 694174..694554 (+) 381 WP_059106502.1 phage holin family protein -
  DQL57_RS03165 (NCTC12101_00666) - 694666..695124 (+) 459 WP_059106503.1 peptidoglycan recognition family protein -
  DQL57_RS03170 (NCTC12101_00667) - 695337..695888 (+) 552 WP_059106504.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22060.42 Da        Isoelectric Point: 9.4659

>NTDB_id=1142679 DQL57_RS03135 WP_059106497.1 690767..691330(-) (comK/comK1) [Staphylococcus auricularis strain NCTC12101]
MNFQYVIKQGDMALIPSESVHDMFERTTVLKYNDTPLTVKERTQKIIDRSCRFYGSTYAYKKEDTIRITGITSKPPLLFT
PLFPTYFFPTHSDRKQENAWVNIHYIESIKPLKDRKCKITFVDKQTLTLNVSAHSINHQFLNTVFYYYMMDRLARVTTFD
PDAPIDYSKPQLNIYEALAKYSILEKK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1142679 DQL57_RS03135 WP_059106497.1 690767..691330(-) (comK/comK1) [Staphylococcus auricularis strain NCTC12101]
ATGAATTTCCAATATGTCATTAAACAGGGAGATATGGCTTTAATCCCTAGTGAATCAGTCCACGATATGTTTGAAAGGAC
TACCGTATTAAAGTATAACGATACGCCATTAACCGTCAAAGAACGTACGCAAAAGATCATTGACCGCTCTTGCCGTTTTT
ACGGTAGCACCTACGCCTACAAAAAAGAAGATACGATTCGTATTACCGGCATCACTAGTAAACCACCGTTATTATTTACA
CCTCTATTTCCTACTTATTTCTTCCCTACTCACTCAGACCGAAAGCAAGAAAACGCGTGGGTTAATATTCACTACATTGA
ATCGATTAAACCACTTAAAGATAGAAAATGTAAAATCACTTTTGTCGATAAACAAACATTAACGCTCAACGTCTCAGCAC
ACAGCATCAATCACCAATTCCTCAACACTGTCTTCTATTACTATATGATGGACCGTCTCGCCCGCGTCACGACTTTTGAC
CCCGATGCTCCCATTGACTATTCCAAGCCTCAACTTAATATTTACGAAGCGCTAGCCAAATACTCAATATTAGAGAAAAA
GTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

54.098

97.861

0.529
  comK/comK1 Staphylococcus aureus N315

54.098

97.861

0.529

Multiple sequence alignment