Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | DQL18_RS02990 | Genome accession | NZ_LS483486 |
| Coordinates | 591238..591651 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain NCTC12194 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 586238..596651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL18_RS02970 (NCTC12194_00592) | - | 586726..589320 (-) | 2595 | WP_105905476.1 | penicillin-binding protein 1A | - |
| DQL18_RS02975 (NCTC12194_00593) | comA | 589419..590216 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| DQL18_RS02980 (NCTC12194_00594) | comB | 590217..590723 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| DQL18_RS02985 (NCTC12194_00595) | comC | 590720..591241 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| DQL18_RS02990 (NCTC12194_00596) | comD | 591238..591651 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| DQL18_RS02995 | pilQ | 591661..592999 (+) | 1339 | Protein_559 | type IV pilus secretin PilQ | - |
| DQL18_RS03000 (NCTC12194_00599) | - | 593012..593698 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| DQL18_RS03005 (NCTC12194_00600) | nfuA | 593774..594370 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| DQL18_RS03010 (NCTC12194_00601) | nudC | 594437..595231 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| DQL18_RS03015 (NCTC12194_00602) | - | 595267..595857 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| DQL18_RS03020 (NCTC12194_00603) | - | 595997..596269 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=1142624 DQL18_RS02990 WP_011272047.1 591238..591651(+) (comD) [Haemophilus influenzae strain NCTC12194]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1142624 DQL18_RS02990 WP_011272047.1 591238..591651(+) (comD) [Haemophilus influenzae strain NCTC12194]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |