Detailed information NTG0114259

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPOKI828_RS07520
• Genome accession: NZ_CP006826
• Coordinates: 1561954..1562916 (-)
• Length: 320 a.a.
• NCBI ID: WP_025223378.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki828
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1556954..1567916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI828_RS07500 (HPOKI828_07820)	-	1557259..1558191 (-)	933	WP_025223374.1	GDP-L-fucose synthase family protein	-
HPOKI828_RS07505 (HPOKI828_07825)	gmd	1558184..1559329 (-)	1146	WP_025223375.1	GDP-mannose 4,6-dehydratase	-
HPOKI828_RS07510 (HPOKI828_07830)	-	1559343..1560755 (-)	1413	WP_025223376.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOKI828_RS07515 (HPOKI828_07835)	comB10	1560825..1561961 (-)	1137	WP_025223377.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI828_RS07520 (HPOKI828_07840)	comB9	1561954..1562916 (-)	963	WP_025223378.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI828_RS07525 (HPOKI828_07845)	comB8	1562916..1563659 (-)	744	WP_025223379.1	type IV secretion system protein	Machinery gene
HPOKI828_RS07530 (HPOKI828_07850)	comB7	1563656..1563781 (-)	126	WP_001217867.1	hypothetical protein	Machinery gene
HPOKI828_RS07535 (HPOKI828_07855)	comB6	1563797..1564852 (-)	1056	WP_025223380.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI828_RS07540 (HPOKI828_07860)	-	1564860..1565855 (-)	996	WP_025223381.1	PDZ domain-containing protein	-
HPOKI828_RS07545 (HPOKI828_07865)	-	1565855..1566148 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI828_RS07550 (HPOKI828_07870)	panD	1566159..1566509 (-)	351	WP_025223382.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36862.47 Da
• Isoelectric Point: 9.2454

>NTDB_id=114259 HPOKI828_RS07520 WP_025223378.1 1561954..1562916(-) (comB9) [Helicobacter pylori oki828]
MRKVLCTLVGFLLFFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLENAPKNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=114259 HPOKI828_RS07520 WP_025223378.1 1561954..1562916(-) (comB9) [Helicobacter pylori oki828]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGTTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCCTTGAAAATGCCCCCAAAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACGAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTTGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTATATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	90.798	100	0.925