Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPOKI828_RS07525 Genome accession   NZ_CP006826
Coordinates   1562916..1563659 (-) Length   247 a.a.
NCBI ID   WP_025223379.1    Uniprot ID   -
Organism   Helicobacter pylori oki828     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1557916..1568659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI828_RS07505 (HPOKI828_07825) gmd 1558184..1559329 (-) 1146 WP_025223375.1 GDP-mannose 4,6-dehydratase -
  HPOKI828_RS07510 (HPOKI828_07830) - 1559343..1560755 (-) 1413 WP_025223376.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPOKI828_RS07515 (HPOKI828_07835) comB10 1560825..1561961 (-) 1137 WP_025223377.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPOKI828_RS07520 (HPOKI828_07840) comB9 1561954..1562916 (-) 963 WP_025223378.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPOKI828_RS07525 (HPOKI828_07845) comB8 1562916..1563659 (-) 744 WP_025223379.1 type IV secretion system protein Machinery gene
  HPOKI828_RS07530 (HPOKI828_07850) comB7 1563656..1563781 (-) 126 WP_001217867.1 hypothetical protein Machinery gene
  HPOKI828_RS07535 (HPOKI828_07855) comB6 1563797..1564852 (-) 1056 WP_025223380.1 P-type conjugative transfer protein TrbL Machinery gene
  HPOKI828_RS07540 (HPOKI828_07860) - 1564860..1565855 (-) 996 WP_025223381.1 PDZ domain-containing protein -
  HPOKI828_RS07545 (HPOKI828_07865) - 1565855..1566148 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HPOKI828_RS07550 (HPOKI828_07870) panD 1566159..1566509 (-) 351 WP_025223382.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28646.82 Da        Isoelectric Point: 8.9830

>NTDB_id=114260 HPOKI828_RS07525 WP_025223379.1 1562916..1563659(-) (comB8) [Helicobacter pylori oki828]
MKEKPFNSEQLAFLEELLSHQEKHLENKFSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=114260 HPOKI828_RS07525 WP_025223379.1 1562916..1563659(-) (comB8) [Helicobacter pylori oki828]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGTTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAGCGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCAATTTATCAGCAAGACAATAACCCCATTGCAAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGCGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCCAAAAACCCTACCGGCTTTAAAATTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.951

100

0.96

Multiple sequence alignment