Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DQL19_RS00290 Genome accession   NZ_LS483480
Coordinates   58393..59109 (-) Length   238 a.a.
NCBI ID   WP_012055311.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC13377     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53393..64109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL19_RS00270 (NCTC13377_00052) nrdR 53485..53934 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  DQL19_RS00275 (NCTC13377_00053) recC 53989..57369 (-) 3381 WP_061659653.1 exodeoxyribonuclease V subunit gamma -
  DQL19_RS00280 (NCTC13377_00054) comQ 57415..57702 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  DQL19_RS00285 (NCTC13377_00055) comP 57695..58378 (-) 684 WP_015701955.1 DUF2572 family protein Machinery gene
  DQL19_RS00290 (NCTC13377_00056) comO 58393..59109 (-) 717 WP_012055311.1 type II secretion system protein J Machinery gene
  DQL19_RS00295 (NCTC13377_00057) comN 59109..59621 (-) 513 WP_077643668.1 type II secretion system protein Machinery gene
  DQL19_RS00300 (NCTC13377_00058) suhB 59821..60624 (+) 804 WP_015701954.1 inositol-1-monophosphatase -
  DQL19_RS00305 (NCTC13377_00059) nrfE 60733..62640 (+) 1908 WP_077643669.1 heme lyase NrfEFG subunit NrfE -
  DQL19_RS00310 (NCTC13377_00060) - 62640..63170 (+) 531 WP_015701952.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26745.09 Da        Isoelectric Point: 9.5508

>NTDB_id=1142471 DQL19_RS00290 WP_012055311.1 58393..59109(-) (comO) [Haemophilus influenzae strain NCTC13377]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCVGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1142471 DQL19_RS00290 WP_012055311.1 58393..59109(-) (comO) [Haemophilus influenzae strain NCTC13377]
ATGATGAAAGTCTTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGCTATTACATTTAAAGTTACAGGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTGTTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment