Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DQL19_RS00295 Genome accession   NZ_LS483480
Coordinates   59109..59621 (-) Length   170 a.a.
NCBI ID   WP_077643668.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC13377     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 54109..64621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL19_RS00280 (NCTC13377_00054) comQ 57415..57702 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  DQL19_RS00285 (NCTC13377_00055) comP 57695..58378 (-) 684 WP_015701955.1 DUF2572 family protein Machinery gene
  DQL19_RS00290 (NCTC13377_00056) comO 58393..59109 (-) 717 WP_012055311.1 type II secretion system protein J Machinery gene
  DQL19_RS00295 (NCTC13377_00057) comN 59109..59621 (-) 513 WP_077643668.1 type II secretion system protein Machinery gene
  DQL19_RS00300 (NCTC13377_00058) suhB 59821..60624 (+) 804 WP_015701954.1 inositol-1-monophosphatase -
  DQL19_RS00305 (NCTC13377_00059) nrfE 60733..62640 (+) 1908 WP_077643669.1 heme lyase NrfEFG subunit NrfE -
  DQL19_RS00310 (NCTC13377_00060) - 62640..63170 (+) 531 WP_015701952.1 DsbE family thiol:disulfide interchange protein -
  DQL19_RS00315 (NCTC13377_00061) nrfF 63167..64321 (+) 1155 WP_015701951.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19821.05 Da        Isoelectric Point: 8.9743

>NTDB_id=1142472 DQL19_RS00295 WP_077643668.1 59109..59621(-) (comN) [Haemophilus influenzae strain NCTC13377]
MQKGMTLVELLIGLAIISIALNFAAPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1142472 DQL19_RS00295 WP_077643668.1 59109..59621(-) (comN) [Haemophilus influenzae strain NCTC13377]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGCACCATT
ATGGAAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACAGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.824

100

0.988

Multiple sequence alignment