Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   DQL19_RS00280 Genome accession   NZ_LS483480
Coordinates   57415..57702 (-) Length   95 a.a.
NCBI ID   WP_005648029.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC13377     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52415..62702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL19_RS00270 (NCTC13377_00052) nrdR 53485..53934 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  DQL19_RS00275 (NCTC13377_00053) recC 53989..57369 (-) 3381 WP_061659653.1 exodeoxyribonuclease V subunit gamma -
  DQL19_RS00280 (NCTC13377_00054) comQ 57415..57702 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  DQL19_RS00285 (NCTC13377_00055) comP 57695..58378 (-) 684 WP_015701955.1 DUF2572 family protein Machinery gene
  DQL19_RS00290 (NCTC13377_00056) comO 58393..59109 (-) 717 WP_012055311.1 type II secretion system protein J Machinery gene
  DQL19_RS00295 (NCTC13377_00057) comN 59109..59621 (-) 513 WP_077643668.1 type II secretion system protein Machinery gene
  DQL19_RS00300 (NCTC13377_00058) suhB 59821..60624 (+) 804 WP_015701954.1 inositol-1-monophosphatase -
  DQL19_RS00305 (NCTC13377_00059) nrfE 60733..62640 (+) 1908 WP_077643669.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11003.78 Da        Isoelectric Point: 9.2205

>NTDB_id=1142469 DQL19_RS00280 WP_005648029.1 57415..57702(-) (comQ) [Haemophilus influenzae strain NCTC13377]
MNKGISFITLLFSLALFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1142469 DQL19_RS00280 WP_005648029.1 57415..57702(-) (comQ) [Haemophilus influenzae strain NCTC13377]
ATGAATAAAGGAATATCTTTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

96.842

100

0.968

Multiple sequence alignment