Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DQL19_RS00195 Genome accession   NZ_LS483480
Coordinates   41420..42094 (-) Length   224 a.a.
NCBI ID   WP_005647998.1    Uniprot ID   Q4QLV0
Organism   Haemophilus influenzae strain NCTC13377     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 36420..47094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL19_RS00175 (NCTC13377_00033) hinT 38124..38474 (+) 351 WP_005627389.1 purine nucleoside phosphoramidase -
  DQL19_RS00180 (NCTC13377_00034) - 38474..38824 (+) 351 WP_005647993.1 DUF1425 domain-containing protein -
  DQL19_RS00185 (NCTC13377_00035) nagZ 38828..39880 (+) 1053 WP_041175055.1 beta-N-acetylhexosaminidase -
  DQL19_RS00190 (NCTC13377_00036) rlmC 39877..41055 (+) 1179 WP_015701965.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  DQL19_RS00195 (NCTC13377_00037) crp 41420..42094 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  DQL19_RS00200 (NCTC13377_00038) - 42079..42330 (-) 252 WP_005647999.1 YheU family protein -
  DQL19_RS00205 (NCTC13377_00039) slmA 42352..43008 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  DQL19_RS00210 (NCTC13377_00040) dut 43012..43467 (-) 456 WP_005631431.1 dUTP diphosphatase -
  DQL19_RS00215 (NCTC13377_00041) coaBC 43515..44717 (-) 1203 WP_015701964.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DQL19_RS00220 (NCTC13377_00042) radC 44880..45545 (+) 666 WP_013527272.1 DNA repair protein RadC -
  DQL19_RS00225 (NCTC13377_00043) rpmB 45759..45995 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  DQL19_RS00230 (NCTC13377_00044) rpmG 46007..46177 (+) 171 WP_005613503.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25151.85 Da        Isoelectric Point: 6.8375

>NTDB_id=1142468 DQL19_RS00195 WP_005647998.1 41420..42094(-) (crp) [Haemophilus influenzae strain NCTC13377]
MSNELTEIDEVVTSSQEEATQRDPVLDWFLTHCHLHKYPAKSTLIHAGEDATTLYYVIKGSVMVSSKDDEGKEMILTYLG
AGQFFGEAGLFDEGSKRSAWVKTKTTCEIAEISYKKYRQLIQANPEILMFLTAQLARRLQNTSRQVTNLAFLDVAGRIAQ
TLMNLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGAR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1142468 DQL19_RS00195 WP_005647998.1 41420..42094(-) (crp) [Haemophilus influenzae strain NCTC13377]
ATGTCAAATGAATTAACCGAAATTGATGAAGTTGTAACCTCCTCTCAAGAAGAAGCAACTCAACGAGATCCCGTTTTAGA
TTGGTTTCTTACTCACTGCCATTTGCATAAATATCCTGCAAAATCAACTTTAATTCATGCTGGGGAAGATGCGACCACGC
TGTATTATGTAATTAAAGGTTCTGTAATGGTATCTTCAAAAGATGATGAAGGCAAAGAGATGATCCTCACTTACTTAGGT
GCAGGACAATTTTTTGGCGAAGCTGGATTATTTGATGAAGGTTCAAAACGATCAGCTTGGGTAAAAACAAAAACAACATG
TGAAATTGCTGAAATTTCCTATAAGAAATATCGCCAGTTGATTCAGGCAAACCCTGAAATCTTAATGTTTCTCACTGCAC
AATTGGCAAGACGTTTGCAAAATACATCACGTCAAGTCACGAATTTGGCATTTTTAGACGTTGCAGGTCGCATCGCTCAA
ACTTTAATGAACTTAGCTAAACAGCCTGAAGCAATGACGCATCCTGATGGTATGCAAATCAAAATTACACGCCAAGAAAT
AGGGCAAATGGTGGGTTGTTCACGAGAAACTGTGGGGCGCATTATTAAGATGTTGGAGGATCAGAATCTTATCCACGCTC
ATGGAAAAACAATCGTTGTATATGGCGCAAGATAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(36-124)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(156-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

100

100

1
  crp Vibrio cholerae strain A1552

75.49

91.071

0.687
  crp Acinetobacter baumannii D1279779

48.705

86.161

0.42

Multiple sequence alignment