Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   DQN71_RS07480 Genome accession   NZ_LS483471
Coordinates   1427883..1428887 (-) Length   334 a.a.
NCBI ID   WP_015605420.1    Uniprot ID   -
Organism   Streptococcus cristatus strain NCTC13807     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422883..1433887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS07465 (NCTC13807_01433) pfkA 1423215..1424225 (-) 1011 WP_015605418.1 6-phosphofructokinase -
  DQN71_RS07470 (NCTC13807_01434) - 1424310..1427420 (-) 3111 WP_015605419.1 DNA polymerase III subunit alpha -
  DQN71_RS07480 (NCTC13807_01435) ccpA 1427883..1428887 (-) 1005 WP_015605420.1 catabolite control protein A Regulator
  DQN71_RS07485 (NCTC13807_01436) ppc 1429137..1431983 (-) 2847 WP_015605421.1 phosphoenolpyruvate carboxylase -
  DQN71_RS07490 (NCTC13807_01437) ftsW 1432031..1433245 (-) 1215 WP_015605422.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37084.17 Da        Isoelectric Point: 6.0780

>NTDB_id=1142322 DQN71_RS07480 WP_015605420.1 1427883..1428887(-) (ccpA) [Streptococcus cristatus strain NCTC13807]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIERLDYRPNAVARGLASKKTTTVGVVIPNITNSYFS
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNTLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTVDVEHQLPS
VNIDYKQATIDAVELLAKRNKKIAFVSGPLVDDINGKIRLSGYKEALKGQKISYSEGLVFESKYSYDDGYYLAERLIASK
ATAAFVTGDELAAGLLNGLADRGVHIPEDFEIITSDDSQIARFTRPNLSTIGQPLYDIGAISMRMLTKIMHKEELEEREV
LLAHSISERKSTRK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1142322 DQN71_RS07480 WP_015605420.1 1427883..1428887(-) (ccpA) [Streptococcus cristatus strain NCTC13807]
ATGAACACAGACGACACAGTAACCATTTATGATGTCGCCCGTGAAGCGGGAGTTTCAATGGCGACGGTCAGCCGGGTCGT
AAATGGAAACAAAAATGTAAAAGAAAATACACGTAAAAAAGTATTGGAAGTGATTGAACGCCTTGACTATCGTCCTAATG
CTGTTGCCCGCGGTTTGGCCAGTAAAAAGACGACCACTGTCGGTGTTGTAATCCCAAATATTACCAATAGTTACTTCTCT
ACTCTAGCCAAAGGGATTGATGATATTGCCGAGATGTATAAGTACAATATCGTCCTAGCAAATAGTGATGAAGATGACGA
CAAGGAAGTTTCGGTTGTCAATACGCTTTTCTCTAAGCAAGTGGACGGTATTATTTTTATGGGCTATCATCTGACAGAAA
AGATTCGCTCAGAATTTTCACGTTCACGGACACCAGTAGTTCTAGCGGGTACGGTGGATGTAGAGCATCAGTTGCCAAGT
GTTAATATTGACTACAAACAAGCAACGATTGATGCTGTGGAACTATTGGCTAAGCGCAATAAGAAAATTGCTTTTGTCAG
CGGGCCTTTGGTGGATGATATCAATGGTAAAATCCGCTTGTCTGGCTACAAAGAAGCTCTGAAAGGCCAGAAAATTTCTT
ACAGCGAAGGCCTGGTATTCGAGTCTAAATATAGCTATGATGACGGCTACTATCTAGCTGAACGCTTGATTGCTTCAAAA
GCCACAGCAGCCTTTGTGACTGGAGATGAGTTGGCAGCAGGTTTGCTCAATGGCTTGGCTGATCGAGGTGTTCATATTCC
TGAAGACTTCGAAATCATTACCAGCGATGATTCGCAAATTGCTCGCTTTACTCGCCCTAATCTGTCTACTATTGGGCAAC
CTTTGTATGACATTGGTGCAATCAGTATGCGGATGCTGACGAAAATTATGCATAAAGAAGAGTTGGAAGAGCGTGAAGTT
CTCCTAGCCCATAGTATCAGTGAGCGTAAATCAACTCGTAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

92.216

100

0.922
  ccpA Streptococcus pneumoniae D39

88.323

100

0.883
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.798

99.102

0.563

Multiple sequence alignment