Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   DQN71_RS04050 Genome accession   NZ_LS483471
Coordinates   783093..784322 (+) Length   409 a.a.
NCBI ID   WP_111694519.1    Uniprot ID   -
Organism   Streptococcus cristatus strain NCTC13807     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 778093..789322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS04015 (NCTC13807_00772) endA 778197..779045 (+) 849 WP_015604694.1 DNA/RNA non-specific endonuclease Machinery gene
  DQN71_RS04020 (NCTC13807_00773) - 779253..780212 (+) 960 WP_015604695.1 ROK family glucokinase -
  DQN71_RS04025 (NCTC13807_00774) - 780257..780664 (+) 408 WP_015604696.1 hypothetical protein -
  DQN71_RS04030 (NCTC13807_00775) - 780748..781587 (+) 840 WP_015604697.1 thymidylate synthase -
  DQN71_RS04035 (NCTC13807_00776) - 781723..782208 (+) 486 WP_015604698.1 hypothetical protein -
  DQN71_RS04040 (NCTC13807_00777) - 782362..782874 (+) 513 WP_015604699.1 dihydrofolate reductase -
  DQN71_RS04050 (NCTC13807_00778) clpX 783093..784322 (+) 1230 WP_111694519.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  DQN71_RS04055 (NCTC13807_00779) yihA 784332..784919 (+) 588 WP_015604701.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DQN71_RS04060 (NCTC13807_00780) - 785202..785900 (+) 699 WP_015604702.1 glucosaminidase domain-containing protein -
  DQN71_RS04065 (NCTC13807_00781) mmuM 786038..786985 (+) 948 WP_015604703.1 homocysteine S-methyltransferase -
  DQN71_RS04070 (NCTC13807_00782) - 787099..787896 (+) 798 WP_015604704.1 formate/nitrite transporter family protein -
  DQN71_RS04075 (NCTC13807_00783) - 788024..788365 (+) 342 WP_015604705.1 hypothetical protein -
  DQN71_RS04080 (NCTC13807_00785) rplJ 788597..789097 (+) 501 WP_015604706.1 50S ribosomal protein L10 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45583.08 Da        Isoelectric Point: 4.4680

>NTDB_id=1142314 DQN71_RS04050 WP_111694519.1 783093..784322(+) (clpX) [Streptococcus cristatus strain NCTC13807]
MPTNRNNEMMVYCSFCGKNQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDSREEDDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDEGASYMQAIVADDIQKFRIIPELIGRLPVFAALEQLTVDDLVRI
LNEPRNALVKQYQTLLSYDDVELEFDEEALQAIARKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVDG
TDKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1142314 DQN71_RS04050 WP_111694519.1 783093..784322(+) (clpX) [Streptococcus cristatus strain NCTC13807]
ATGCCTACAAATCGTAATAATGAGATGATGGTATATTGTTCTTTCTGTGGAAAGAATCAGGACGAAGTCCAAAAAATTAT
TGCGGGCAACAATGCCTTTATCTGTAATGAATGTGTCGAGTTGGCGCAGGAAATTATCCGAGAAGAATTAGCTGAGGAAG
TTCTAGCTGATCTTTCTGAAGTACCAAAACCGCAAGAATTGCTCAATATCTTGAACCACTATGTGATCGGTCAGGATCGT
GCTAAGCGAGCTTTGGCTGTTGCTGTTTACAATCACTACAAGCGGATCAATTTTCATGATAGCCGCGAAGAGGATGATGT
GGAGCTGCAAAAATCCAACATCCTCATGATTGGTCCAACTGGATCTGGGAAAACCTTCCTGGCTCAGACCTTGGCGCGCA
GTCTCAATGTTCCTTTTGCTATCGCGGATGCTACTGCTTTAACTGAGGCTGGCTATGTCGGTGAAGACGTGGAAAATATC
TTGCTCAAGCTCTTACAGGCAGCTGACTTTAATATCGAGCGAGCAGAACGTGGCATCATCTATGTGGATGAAATCGATAA
GATTGCTAAGAAGAGTGAAAATGTTTCTATCACTCGTGATGTTTCAGGTGAGGGTGTTCAGCAAGCCTTGCTGAAGATTA
TCGAAGGAACAGTTGCTAGCGTGCCTCCTCAGGGTGGTCGTAAGCATCCACAGCAAGAAATGATTCAGGTTGATACCAAG
AACATTCTCTTTATCGTTGGTGGTGCTTTTGACGGTATCGAAGAAATTGTTAAACAACGTCTTGGTGAGAAGATTATCGG
TTTCGGTCAAAATAATAAGGCAATTGATGAAGGTGCGTCTTATATGCAAGCCATTGTTGCTGACGATATTCAAAAATTTC
GAATTATTCCTGAGTTGATCGGTCGTTTGCCAGTTTTTGCAGCCCTAGAGCAGCTGACTGTTGATGATTTGGTTCGCATT
TTGAATGAACCGAGAAATGCGCTAGTGAAGCAATATCAAACCTTGCTTTCTTATGATGATGTTGAACTTGAATTTGACGA
GGAAGCCCTGCAAGCTATTGCTAGGAAAGCCATCGAACGCAAGACAGGTGCGCGTGGCCTTCGTTCAATTATTGAAGAAA
CCATGATGGATGTCATGTTTGAAGTGCCGAGTCAGGAAAATGTCAAGCTGGTTCGTATCACGAAGGAAGCAGTGGACGGC
ACAGACAAGCCAATCTTGGAAACTGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.308

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.105

98.044

0.57

Multiple sequence alignment