Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQN71_RS02490 Genome accession   NZ_LS483471
Coordinates   482803..483729 (+) Length   308 a.a.
NCBI ID   WP_015605270.1    Uniprot ID   -
Organism   Streptococcus cristatus strain NCTC13807     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 477803..488729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS02480 (NCTC13807_00479) amiA3 479265..481241 (+) 1977 WP_015605272.1 peptide ABC transporter substrate-binding protein Regulator
  DQN71_RS02485 (NCTC13807_00480) amiC 481307..482803 (+) 1497 WP_015605271.1 ABC transporter permease Regulator
  DQN71_RS02490 (NCTC13807_00481) amiD 482803..483729 (+) 927 WP_015605270.1 oligopeptide ABC transporter permease OppC Regulator
  DQN71_RS02495 (NCTC13807_00482) amiE 483738..484805 (+) 1068 WP_015605269.1 ABC transporter ATP-binding protein Regulator
  DQN71_RS02500 (NCTC13807_00483) amiF 484816..485742 (+) 927 WP_015605268.1 ATP-binding cassette domain-containing protein Regulator
  DQN71_RS02505 (NCTC13807_00484) - 486002..488191 (+) 2190 WP_041826811.1 PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34664.75 Da        Isoelectric Point: 9.8870

>NTDB_id=1142300 DQN71_RS02490 WP_015605270.1 482803..483729(+) (amiD) [Streptococcus cristatus strain NCTC13807]
MATIDKSKFQFVKRDDFASETIDAPAYSYWRSVIRQFLKKKSTTIMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSMR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISIIATVINLIIGIIVGAIWGISKAVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTLKIVTKNIMPQLVSVIVTTTSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1142300 DQN71_RS02490 WP_015605270.1 482803..483729(+) (amiD) [Streptococcus cristatus strain NCTC13807]
ATGGCTACAATTGATAAAAGTAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
TTCATACTGGCGCTCCGTTATACGTCAATTCTTGAAAAAGAAGTCAACGACTATCATGTTAGGGATTCTAATTGCCATCG
TGTTGATGAGTTTCATTTATCCCATGTTCTCGAAATTTGATTTCAATGATGTCAGCAAGGTAAATGACTTTAGCATGCGT
TATATCAAACCCAATGCTGAGCACTGGTTTGGTACAGATAGCAATGGTAAGTCTTTGTTTGACGGTGTGTGGTTTGGTGC
GCGGAATTCTATCCTGATTTCCATTATTGCAACAGTCATTAACTTGATTATCGGAATTATTGTCGGTGCTATCTGGGGGA
TTTCCAAAGCGGTTGATCGTGTCATGATGGAAGTCTATAATATCATTTCAAATATTCCATCCCTCTTGATTGTCATTGTC
TTGACCTACTCTATCGGTGCAGGTTTCTGGAACTTGATATTTGCCATGACCATCACTGGCTGGGTAGGGATTGCTTATAC
AATTCGTATTCAGATTATGCGTTACCGTGATTTGGAGTATAATTTGGCTTCTCGTACTTTGGGAACACCAACTCTTAAAA
TTGTTACCAAGAATATCATGCCACAGTTGGTGTCAGTTATCGTGACCACGACTTCTCAAATGCTTCCAAGCTTTATCTCT
TACGAGGCCTTTCTGTCTTTCTTTGGGCTTGGTCTTCCTGTGACAGTACCAAGTTTGGGACGCTTGATTTCTGACTATTC
ACAAAACGTAACTACCAACGCTTACCTTTTCTGGATTCCATTGACAACCTTGATCTTGGTATCCCTGTCCTTCTTCGTAG
TTGGTCAAAACTTAGCCGATGCAAGTGATCCACGGACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.714

100

0.857
  amiD Streptococcus thermophilus LMG 18311

84.416

100

0.844
  amiD Streptococcus thermophilus LMD-9

84.416

100

0.844

Multiple sequence alignment